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Effects of different site preparation methods on the root development of planted Quercus petraea and Pinus nigra / Mathieu Dassot in New forests, vol 52 n° 1 (January 2021)
[article]
Titre : Effects of different site preparation methods on the root development of planted Quercus petraea and Pinus nigra Type de document : Article/Communication Auteurs : Mathieu Dassot , Auteur ; Catherine Collet, Auteur Année de publication : 2021 Article en page(s) : pp 17 - 30 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Termes IGN] phytobiologie
[Termes IGN] Pinus nigra
[Termes IGN] plantation forestière
[Termes IGN] Quercus sessiliflora
[Termes IGN] système radiculaire
[Vedettes matières IGN] BotaniqueRésumé : (auteur) Mechanical site preparation (MSP) is often performed prior to planting to improve the growth and survival of planted seedlings. In this study, we compared root development of 5-years-old Quercus petraea and Pinus nigra seedlings planted in plots that had been prepared with different methods, i.e. deep scarification, deep scarification combined with mounding-subsoiling, herbicide and a control without preparation. Seventy-two trees were excavated (36 per species) and their root system was measured by recording points in a three-dimensional space along their roots. The variation of the number of roots with depth and distance to root collar was assessed and analysed, as well as the root projection area. Our results showed that root development was better in the plots with mechanical preparation, for both Q. petraea and P. nigra, when compared to the control. Combining mounding to subsoiling made the roots extending deeper, especially for Q. petraea. A strong relationship was found between root projection area and root collar diameter, indicating the primary effect of lateral root spread on tree growth. The herbicide treatment induced the highest root growth, which raised questions about the potential negative effects of changes in soil properties caused by MSP methods. Numéro de notice : A2021-965 Affiliation des auteurs : non IGN Thématique : FORET Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1007/s11056-020-09781-7 En ligne : http://dx.doi.org/10.1007/s11056-020-09781-7 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=101352
in New forests > vol 52 n° 1 (January 2021) . - pp 17 - 30[article]Ensemble learning methods on the space of covariance matrices : application to remote sensing scene and multivariate time series classification / Sara Akodad (2021)
Titre : Ensemble learning methods on the space of covariance matrices : application to remote sensing scene and multivariate time series classification Type de document : Thèse/HDR Auteurs : Sara Akodad, Auteur ; Christian Germain, Directeur de thèse ; Lionel Bombrun, Directeur de thèse Editeur : Bordeaux : Université de Bordeaux Année de publication : 2021 Importance : 220 p. Format : 21 x 30 cm Note générale : bibliographie
Thèse présentée pour obtenir le grade de Docteur de l'Université de Bordeaux, Spécialité Automatique, Productique, Signal et Image, Ingénierie cognitiqueLangues : Anglais (eng) Descripteur : [Vedettes matières IGN] Traitement d'image mixte
[Termes IGN] analyse multivariée
[Termes IGN] Castanea sativa
[Termes IGN] classification dirigée
[Termes IGN] classification par réseau neuronal convolutif
[Termes IGN] déformation temporelle dynamique (algorithme)
[Termes IGN] géométrie euclidienne
[Termes IGN] image Sentinel-MSI
[Termes IGN] image Sentinel-SAR
[Termes IGN] maladie phytosanitaire
[Termes IGN] matrice de covariance
[Termes IGN] processus gaussien
[Termes IGN] série temporelle
[Termes IGN] surveillance forestièreIndex. décimale : THESE Thèses et HDR Résumé : (auteur) In view of the growing success of second-order statistics in classification problems, the work of this thesis has been oriented towards the development of learning methods in manifolds. Indeed, covariance matrices are symmetric positive definite matrices that live in a non-Euclidean space. It is therefore necessary to adapt the classical tools of Euclidean geometry to handle this type of data. To do that, we have proposed to exploit the log-Euclidean metric. This latter allows to project the set of covariance matrices on a tangent plane to the manifold defined at a reference point, classically chosen equal to the identity matrix, followed by a vectorization step to obtain the log-Euclidean representation. On this tangent plane, it is possible to define parametric Gaussian models as well as Gaussian mixture models. Nevertheless, this projection on a single tangent plane can induce distortions. In order to overcome this limitation, we have proposed a GMM model composed of several tangent planes, where the reference points are defined by the centers of each cluster.In view of the success of neural networks, in particular convolutional neural networks (CNNs), we have proposed two hybrid transfer learning approaches based on the covariance matrix computed locally and globally on the CNN convolutional layers’ outputs. The local approach relies on the covariance matrices extracted locally on the first layers of a CNN, which are then encoded by the Fisher vectors computed on their log-Euclidean representation, while for the global approach, a single covariance matrix is computed on the feature maps of the CNN deep layers. Moreover, in order to give more importance to the objects of interest present in the images, we proposed to use a covariance matrix weighted by the saliency information. Furthermore, in order to take advantage of both local and global aspects, these two approaches are subsequently combined in an ensemble strategy.On the other hand, the availability of multivariate time series has aroused the interest of the remote sensing community and more generally of machine learning researchers for the development of new learning strategies dedicated to supervised classification. In particular, methods based on the calculation of point-to-point distance between series. Moreover, two series belonging to the same class can evolve in different ways, which can induce temporal distortions (translation, compression, dilation, etc.). To avoid this, warping methods allow to align the time series. In order to extend this approach to time series of covariance matrices, while ensuring invariance to the re-parametrization of the series, we were interested in the TSRVF representation. In the same context, several ensemble methods have been proposed in the literature, including TCK, which relies on similarity computation to classify time series. We have proposed to extend this strategy to covariance matrices by introducing the SO-TCK approach which relies on the log-Euclidean representation of such matrices. Finally, the last axis of this thesis concerns the modeling of temporal trajectories of signals measured by the radar (Sentinel 1) and optical (Sentinel 2) sensors. In particular, we are interested in the forestry problem of the chestnut ink disease in the Montmorency forest. For this purpose, we developed classification and regression models to predict a health status score from the covariance matrix computed on multi-temporal radiometric attributes. Note de contenu : Introduction
1- Riemannian geometry and statistical modeling on the space of Symmetric Positive Definite (SPD) matrices
2- Ensemble learning approaches based on covariance pooling of CNN Features
3- Symmetric positive definite matrix time series classification
4- Forest health monitoring using Sentinel-1 and Sentinel-2 time series
Conclusions and perspectivesNuméro de notice : 28605 Affiliation des auteurs : non IGN Thématique : FORET/IMAGERIE/MATHEMATIQUE Nature : Thèse française Note de thèse : Thèse de Doctorat : Automatique, Productique, Signal et Image, Ingénierie cognitique : Bordeaux : 2021 Organisme de stage : IMS DOI : sans En ligne : https://tel.hal.science/tel-03484011 Format de la ressource électronique : URL Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=99446 Examining the effectiveness of Sentinel-1 and 2 imagery for commercial forest species mapping / Mthembeni Mngadi in Geocarto international, vol 36 n° 1 ([01/01/2021])
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Titre : Examining the effectiveness of Sentinel-1 and 2 imagery for commercial forest species mapping Type de document : Article/Communication Auteurs : Mthembeni Mngadi, Auteur ; John Odindi, Auteur ; Kabir Peerbhay, Auteur ; Onisimo Mutanga, Auteur Année de publication : 2021 Article en page(s) : pp 1 - 12 Note générale : Bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Traitement d'image mixte
[Termes IGN] analyse discriminante
[Termes IGN] carte forestière
[Termes IGN] Eucalyptus (genre)
[Termes IGN] image Sentinel-MSI
[Termes IGN] image Sentinel-SAR
[Termes IGN] KwaZulu-Natal (Afrique du Sud)
[Termes IGN] Pinus (genre)
[Termes IGN] télédétection spatialeRésumé : (Auteur) The successful launch and operation of the Sentinel satellite platform has provided access to freely available remotely sensed data useful for commercial forest species discrimination. Sentinel – 1 (S1) with a synthetic aperture radar (SAR) sensor and Sentinel – 2 (S2) multi-spectral sensor with additional and strategically positioned bands offer great potential for providing reliable information for discriminating and mapping commercial forest species. In this study, we sought to determine the value of S1 and S2 data characteristics in discriminating and mapping commercial forest species. Using linear discriminant analysis (LDA) algorithm, S2 multi-spectral imagery showed an overall classification accuracy of 84% (kappa = 0.81), with bands such as the red-edge (703.9–740.2 nm), narrow near infrared (835.1–864.8 nm), and short wave infrared (1613.7–2202.4 nm) particularly influential in discriminating individual forest species stands. When Sentinel 2’s spectral wavebands were fused with Sentinel 1’s (SAR) VV and VH polarimetric modes, overall classification accuracies improved to 87% (kappa = 0.83) and 88% (kappa = 0.85), respectively. These findings demonstrate the value of combining Sentinel’s multispectral and SAR structural information characteristics in improving commercial forest species discrimination. These, in addition to the sensors free availability, higher spatial resolution and larger swath width, offer unprecedented opportunities for improved local and large scale commercial forest species discrimination and mapping. Numéro de notice : A2021-050 Affiliation des auteurs : non IGN Thématique : FORET/IMAGERIE Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1080/10106049.2019.1585483 Date de publication en ligne : 10/06/2019 En ligne : https://doi.org/10.1080/10106049.2019.1585483 Format de la ressource électronique : URL Article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=96719
in Geocarto international > vol 36 n° 1 [01/01/2021] . - pp 1 - 12[article]Réservation
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Code-barres Cote Support Localisation Section Disponibilité 059-2021011 RAB Revue Centre de documentation En réserve L003 Disponible From local to global: A transfer learning-based approach for mapping poplar plantations at national scale using Sentinel-2 / Yousra Hamrouni in ISPRS Journal of photogrammetry and remote sensing, vol 171 (January 2021)
[article]
Titre : From local to global: A transfer learning-based approach for mapping poplar plantations at national scale using Sentinel-2 Type de document : Article/Communication Auteurs : Yousra Hamrouni, Auteur ; Eric Paillassa, Auteur ; Véronique Chéret, Auteur ; et al., Auteur Année de publication : 2021 Article en page(s) : pp 76 - 100 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Applications de télédétection
[Termes IGN] apprentissage automatique
[Termes IGN] base de données forestières
[Termes IGN] carte de la végétation
[Termes IGN] classification par forêts d'arbres décisionnels
[Termes IGN] couvert forestier
[Termes IGN] échantillonnage
[Termes IGN] France (administrative)
[Termes IGN] image Sentinel-MSI
[Termes IGN] mise à jour de base de données
[Termes IGN] Populus (genre)
[Termes IGN] série temporelleRésumé : (auteur) Reliable estimates of poplar plantations area are not available at the French national scale due to the unsuitability and low update rate of existing forest databases for this short-rotation species. While supervised classification methods have been shown to be highly accurate in mapping forest cover from remotely sensed images, their performance depends to a great extent on the labelled samples used to build the models. In addition to their high acquisition cost, such samples are often scarce and not fully representative of the variability in class distributions. Consequently, when classification models are applied to large areas with high intra-class variance, they generally yield poor accuracies because of data shift issues. In this paper, we propose the use of active learning to efficiently adapt a classifier trained on a source image to spatially distinct target images with minimal labelling effort and without sacrificing the classification performance. The adaptation consists in actively adding to the initial local model new relevant training samples from other areas in a cascade that iteratively improves the generalisation capabilities of the classifier leading to a global model tailored to these different areas. This active selection relies on uncertainty sampling to directly focus on the most informative pixels for which the algorithm is the least certain of their class labels. Experiments conducted on Sentinel-2 time series revealed their high capacity to identify poplar plantations at a local scale with an average F-score ranging from 89.5% to 99.3%. For large area adaptation, the results showed that when the same number of training samples was used, active learning outperformed random sampling by up to 5% of the overall accuracy and up to 12% of the class F-score. Additionally, and depending on the class considered, the random sampling model required up to 50% more samples to achieve the same performance of an active learning-based model. Moreover, the results demonstrate the suitability of the derived global model to accurately map poplar plantations among other tree species with overall accuracy values up to 14% higher than those obtained with local models. The proposed approach paves the way for a national scale mapping in an operational context. Numéro de notice : A2021-013 Affiliation des auteurs : non IGN Thématique : FORET/IMAGERIE Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1016/j.isprsjprs.2020.10.018 Date de publication en ligne : 20/11/2020 En ligne : https://doi.org/10.1016/j.isprsjprs.2020.10.018 Format de la ressource électronique : url article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=96417
in ISPRS Journal of photogrammetry and remote sensing > vol 171 (January 2021) . - pp 76 - 100[article]Réservation
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Titre : Genome-wide evolutionary response of European oaks since the Little Ice Age Type de document : Article/Communication Auteurs : Dounia Saleh, Auteur ; Jun Chen, Auteur ; Jean-Charles Leple, Auteur ; Thibault Leroy, Auteur ; Laura Truffaut, Auteur ; Benjamin Dencausse, Auteur ; et al., Auteur ; François Morneau , Auteur Editeur : Paris [France] : Institut national de recherche pour l’agriculture, l’alimentation et l’environnement INRAE (2020-) Année de publication : 2021 Projets : 3-projet - voir note / Importance : 35 p. Note générale : bibliographie
This research was supported by the European Research Council through an Advanced Grant (project TREEPEACE # FP7-339728), by France Génomique (project EVOL-OAK, ANR-10-INBS-09–08), and by the French Forest Service (ONF) (INRAE-ONF TREEPEACE contract).Langues : Anglais (eng) Descripteur : [Termes IGN] dix-huitième siècle
[Termes IGN] dix-neuvième siècle
[Termes IGN] dix-septième siècle
[Termes IGN] France (géographie physique)
[Termes IGN] génétique forestière
[Termes IGN] Quercus sessiliflora
[Termes IGN] quinzième siècle
[Termes IGN] seizième siècle
[Vedettes matières IGN] BotaniqueRésumé : (auteur) The pace of tree microevolution during Anthropocene warming is largely unknown. We used a retrospective approach to monitor genomic changes in oak trees since the Little Ice Age (LIA). Allelic frequency changes were assessed from whole-genome pooled sequences for four age-structured cohorts of sessile oak (Quercus petraea) dating back to 1680, in each of three different oak forests in France. The genetic covariances of allelic frequency changes increased between successive time periods, highlighting genome-wide effects of linked selection. We found imprints of convergent linked selection in the three forests during the late LIA, and a shift of selection during more recent time periods. The changes in allelic covariances within and between forests mirrored the documented changes in the occurrence of extreme events (droughts and frosts) over the last three hundred years. The genomic regions with the highest covariances were enriched in genes involved in plant responses to pathogens and abiotic stresses (temperature and drought). These responses are consistent with the reported sequence of frost (or drought) and disease damage ultimately leading to the oak dieback after extreme events. Our results therefore provide evidence of selection operating on long-lived species during recent climatic changes. Numéro de notice : P2021-004 Affiliation des auteurs : IGN+Ext (2020- ) Thématique : FORET Nature : Preprint nature-HAL : Préprint DOI : 10.1101/2021.05.25.445558 Date de publication en ligne : 27/05/2021 En ligne : https://doi.org/10.1101/2021.05.25.445558 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=97846 Interactions between oak and cervids during the process of forest regeneration / Julien Barrere (2021)PermalinkIs Xylella fastidiosa a serious threat to European forests? / Marie-Laure Desprez-Loustau in Forestry, an international journal of forest research, vol 94 n° 1 (January 2021)PermalinkRange-wide demographic patterns in European forests along climatic marginality gradients : An approach using national forest inventories / Alexandre Changenet (2021)PermalinkThe Impact of ash dieback on veteran trees in Southwestern Sweden / Vikki Bengtsson in Baltic forestry, vol 27 n° 1 ([01/01/2021])PermalinkThe strong and the stronger: The effects of increasing ozone and nitrogen dioxide concentrations in pollen of different forest species / Sónia Pereira in Forests, vol 12 n° 1 (January 2021)PermalinkTopographic, edaphic and climate influences on aspen (Populus tremuloides) drought stress on an intermountain bunchgrass prairie / Andrew Neary in Forest ecology and management, vol 479 ([01/01/2021])PermalinkClimate sensitive single tree growth modeling using a hierarchical Bayes approach and integrated nested Laplace approximations (INLA) for a distributed lag model / Arne Nothdurft in Forest ecology and management, vol 478 ([15/12/2020])PermalinkCompetition overrides climate as trigger of growth decline in a mixed Fagaceae Mediterranean rear-edge forest / Alvaro Rubio-Cuadrado in Annals of Forest Science, vol 77 n° 4 (December 2020)PermalinkQuantification of cotton water consumption by remote sensing / Jefferson Vieira José in Geocarto international, vol 35 n° 16 ([01/12/2020])PermalinkIs field-measured tree height as reliable as believed – Part II, A comparison study of tree height estimates from conventional field measurement and low-cost close-range remote sensing in a deciduous forest / Luka Jurjević in ISPRS Journal of photogrammetry and remote sensing, vol 169 (November 2020)PermalinkDrought stress detection in juvenile oilseed rape using hyperspectral imaging with a focus on spectra variability / Wiktor R. Żelazny in Remote sensing, vol 12 n° 20 (October-2 2020)PermalinkAtmospheric pathways and distance range analysis of castanea pollen transport in Southern Spain / Rocio López-Orozco in Forests, vol 11 n° 10 (October 2020)PermalinkGround-based remote sensing of forests exploiting GNSS signals / Leila Guerriero in IEEE Transactions on geoscience and remote sensing, vol 58 n° 10 (October 2020)PermalinkL-band SAR for estimating aboveground biomass of rubber plantation in Java Island, Indonesia / Bambang H Trisasongko in Geocarto international, vol 35 n° 12 ([01/09/2020])PermalinkCarbon stocks, partitioning, and wood composition in short-rotation forestry system under reduced planting spacing / Felipe Schwerz in Annals of Forest Science, vol 77 n° 3 (September 2020)PermalinkChloroplast haplotypes of Northern red oak (Quercus rubra L.) stands in Germany suggest their origin from Northeastern Canada / Jeremias Götz in Forests, vol 11 n° 9 (September 2020)PermalinkClimate–growth relationships at the transition between Fagus sylvatica and Pinus mugo forest communities in a Mediterranean mountain / Chiara Calderano in Annals of Forest Science, vol 77 n° 3 (September 2020)PermalinkPrecise extraction of citrus fruit trees from a Digital Surface Model using a unified strategy: detection, delineation, and clustering / Ali Ozgun Ok in Photogrammetric Engineering & Remote Sensing, PERS, vol 86 n° 9 (September 2020)PermalinkUse of non-destructive test methods on Irish hardwood standing trees and small-diameter round timber for prediction of mechanical properties / Daniel F. Llana in Annals of Forest Science, vol 77 n° 3 (September 2020)PermalinkTowards a semi-automated mapping of Australia native invasive alien Acacia trees using Sentinel-2 and radiative transfer models in South Africa / Cecilia Masemola in ISPRS Journal of photogrammetry and remote sensing, vol 166 (August 2020)Permalink