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Forest tree genomics: 10 achievements from the past 10 years and future prospects / Christophe Plomion in Annals of Forest Science, vol 73 n° 1 (March 2016)
[article]
Titre : Forest tree genomics: 10 achievements from the past 10 years and future prospects Type de document : Article/Communication Auteurs : Christophe Plomion, Auteur ; Catherine Bastien, Auteur ; Marie-Béatrice Bogeat-Triboulot, Auteur ; et al., Auteur Année de publication : 2016 Article en page(s) : pp 77 - 103 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Végétation
[Termes IGN] arbre (flore)
[Termes IGN] biologie
[Termes IGN] état de conservation
[Termes IGN] forêt
[Termes IGN] génétique
[Termes IGN] reproduction (végétation)Résumé : (auteur) Key message : This review highlights some of the discoveries and applications made possible by “omics” technologies over the last 10 years and provides perspectives for pioneering research to increase our understanding of tree biology.
Context : A decade after the first forest tree genome sequence was released into the public domain, the rapidly evolving genomics and bioinformatics toolbox has advanced our understanding of the structure, functioning, and evolution of forest tree genomes.
Aims and methods : This review highlights some of the discoveries and applications that “omics” technologies have made possible for forest trees over the past 10 years.
Results : In this review, we start by our current understanding of genome evolution and intricacies of gene regulation for reproduction, development, and responses to biotic and abiotic stresses. We then skim over advances in interactome analysis and epigenomics, the knowledge of the extent of genetic variation within and between species, revealing micro- and macro-evolutionary processes and species history, together with the complex architecture of quantitative traits. We finally end with applications in genetic resource conservation and breeding.
Conclusion : The knowledge gained through the use of these technologies has a huge potential impact for adapting forests to the main challenges they will have to face: changing demand from ecosystem services with potentially conflicting strategies in terms of conservation and use, as well as climate changes and associated threats. Genomics will undoubtedly play a major role over the next decade and beyond, not only to further understand the mechanisms underlying adaptation and evolution but also to develop and implement innovative management and policy actions to preserve the adaptability of natural forests and intensively managed plantations.Numéro de notice : A2016-187 Affiliation des auteurs : non IGN Thématique : FORET Nature : Article DOI : 10.1007/s13595-015-0488-3 Date de publication en ligne : 01/03/2016 En ligne : https://doi.org/10.1007/s13595-015-0488-3 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=80614
in Annals of Forest Science > vol 73 n° 1 (March 2016) . - pp 77 - 103[article]Laser scanning based growth analysis of plants as a new challenge for deformation monitoring / Jan Dupuis in Journal of applied geodesy, vol 10 n° 1 (March 2016)
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Titre : Laser scanning based growth analysis of plants as a new challenge for deformation monitoring Type de document : Article/Communication Auteurs : Jan Dupuis, Auteur ; Christoph Holst, Auteur ; Heiner Kuhlmann, Auteur Année de publication : 2016 Article en page(s) : pp 37 - 44 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Lasergrammétrie
[Termes IGN] B-Spline
[Termes IGN] croissance végétale
[Termes IGN] déformation géométrique
[Termes IGN] données lidar
[Termes IGN] données localisées 3D
[Termes IGN] feuille (végétation)
[Termes IGN] maillage par triangles
[Termes IGN] semis de points
[Termes IGN] tessellationRésumé : (auteur) Nowadays, the areal deformation analysis has become an important task in engineering geodesy. Thereby, not only manmade objects are of high interest, also natural objects, like plant organs, are focused more frequently. Thus, the analysis of leaf growth, i. e. the spatial development of the leaf surface, can be seen as a problem of deformation monitoring. In contrast to classical geodetic tasks, the absolute size of the deformation of the leaf surface is small, but usually great compared to the object size. Due to the optical characteristics of leaf surfaces, the point clouds, commonly acquired with high precision close-up laser scanners, provide a point-to-point distance that is small or equal compared to the measurement accuracy. Thus, the point clouds are usually processed and the leaf area is derived from a triangulation-based surface representation (mesh), resulting in a significant uncertainty of area calculation. In this paper, we illustrate the lacks of the mesh-based leaf area calculation. Using high precision gauge blocks as well as a number of tomato leaves, uncertainties of the area derivation are revealed and evaluated. The application of a B-spline approximation illustrates the advantages of an approximation-based approach and introduces the prospect for further research. Numéro de notice : A2016-552 Affiliation des auteurs : non IGN Thématique : FORET/IMAGERIE Nature : Article DOI : 10.1515/jag-2015-0028 En ligne : http://dx.doi.org/10.1515/jag-2015-0028 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=81698
in Journal of applied geodesy > vol 10 n° 1 (March 2016) . - pp 37 - 44[article]Improved salient feature-based approach for automatically separating photosynthetic and nonphotosynthetic components within terrestrial Lidar point cloud data of forest canopies / Lixia Ma in IEEE Transactions on geoscience and remote sensing, vol 54 n° 2 (February 2016)
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Titre : Improved salient feature-based approach for automatically separating photosynthetic and nonphotosynthetic components within terrestrial Lidar point cloud data of forest canopies Type de document : Article/Communication Auteurs : Lixia Ma, Auteur ; Guang Zheng, Auteur ; Jan U.H. Eitel, Auteur ; et al., Auteur Année de publication : 2016 Article en page(s) : pp 679 - 696 Note générale : Bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Lasergrammétrie
[Termes IGN] analyse en composantes indépendantes
[Termes IGN] canopée
[Termes IGN] classification automatique
[Termes IGN] données lidar
[Termes IGN] données localisées 3D
[Termes IGN] feuillu
[Termes IGN] Leaf Area Index
[Termes IGN] photosynthèse
[Termes IGN] Pinophyta
[Termes IGN] reconnaissance de formes
[Termes IGN] semis de points
[Termes IGN] télémétrie laser sur satellite
[Termes IGN] zone saillante 3DRésumé : (Auteur) Accurate separation of photosynthetic and nonphotosynthetic components in a forest canopy from 3-D terrestrial laser scanning (TLS) data is a challenging but of key importance to understand the spatial distribution of the radiation regime, photosynthetic processes, and carbon and water exchanges of the forest canopy. The objective of this paper was to improve current methods for separating photosynthetic and nonphotosynthetic components in TLS data of forest canopies by adding two additional filters only based on its geometric information. By comparing the proposed approach with the eigenvalues plus color information-based method, we found that the proposed approach could effectively improve the overall producer's accuracy from 62.12% to 95.45%, and the overall classification producer's accuracy would increase from 84.28% to 97.80% as the forest leaf area index (LAI) decreases from 4.15 to 3.13. In addition, variations in tree species had negligible effects on the final classification accuracy, as shown by the overall producer's accuracy for coniferous (93.09%) and broadleaf (94.96%) trees. To remove quantitatively the effects of the woody materials in a forest canopy for improving TLS-based LAI estimates, we also computed the “woody-to-total area ratio” based on the classified linear class points from an individual tree. Automatic classification of the forest point cloud data set will facilitate the application of TLS on retrieving 3-D forest canopy structural parameters, including LAI and leaf and woody area ratios. Numéro de notice : A2016-114 Affiliation des auteurs : non IGN Thématique : FORET/IMAGERIE Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1109/TGRS.2015.2459716 En ligne : https://doi.org/10.1109/TGRS.2015.2459716 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=79992
in IEEE Transactions on geoscience and remote sensing > vol 54 n° 2 (February 2016) . - pp 679 - 696[article]Réservation
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Code-barres Cote Support Localisation Section Disponibilité 065-2016021 SL Revue Centre de documentation Revues en salle Disponible Changes in thermal infrared spectra of plants caused by temperature and water stress / Maria F. Buitrago in ISPRS Journal of photogrammetry and remote sensing, vol 111 (January 2016)
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Titre : Changes in thermal infrared spectra of plants caused by temperature and water stress Type de document : Article/Communication Auteurs : Maria F. Buitrago, Auteur ; Thomas A. Groen, Auteur ; Christoph A. Hecker, Auteur ; Andrew K. Skidmore, Auteur Année de publication : 2016 Article en page(s) : pp 22 – 31 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Traitement d'image optique
[Termes IGN] bruit thermique
[Termes IGN] détection de changement
[Termes IGN] feuille (végétation)
[Termes IGN] image thermique
[Termes IGN] végétationRésumé : (auteur) Environmental stress causes changes in leaves and the structure of plants. Although physiological adaptations to stress by plants have been explored, the effect of stress on the spectral properties in the thermal part of the electromagnetic spectrum (3–16 μm) has not yet been investigated.
In this research two plant species (European beech, Fagus sylvatica and rhododendron, Rhododendron cf. catawbiense) that both grow naturally under temperature limited conditions were selected, representing deciduous and evergreen plants respectively. Besides TIR spectra, Leaf Water Content (LWC) and cuticle thickness were measured as possible variables that can explain the changes in TIR spectra.
The results demonstrated that both species, when exposed to either water or temperature stress, showed significant changes in their TIR spectra. The changes in TIR in response to stress were similar within a species, regardless of the stress imposed on them. However, changes in TIR spectra differed between species. For rhododendron emissivity in TIR increased under stress while for beech it decreased. Both species showed depletion of Leaf Water Content (LWC) under stress, ruling LWC out as a main cause for the change in the TIR spectra. Cuticle thickness remained constant for beech, but increased for rhododendron. This suggests that changes in emissivity may be linked to changes in the cuticle thickness and possibly the structure of cuticle. It is known that spectral changes in this region have a close connection with microstructure and biochemistry of leaves. We propose detailed measurements of these changes in the cuticle to analyze the effect of microstructure on TIR spectra.Numéro de notice : A2016-038 Affiliation des auteurs : non IGN Thématique : IMAGERIE Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1016/j.isprsjprs.2015.11.003 Date de publication en ligne : 08/12/2015 En ligne : https://doi.org/10.1016/j.isprsjprs.2015.11.003 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=79517
in ISPRS Journal of photogrammetry and remote sensing > vol 111 (January 2016) . - pp 22 – 31[article]Effects of water and heat on growth of winter wheat in the North China Plain / Hongyan Wang in Geocarto international, vol 31 n° 1 - 2 (January - February 2016)
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Titre : Effects of water and heat on growth of winter wheat in the North China Plain Type de document : Article/Communication Auteurs : Hongyan Wang, Auteur ; Qiangzi Li, Auteur ; Xin Du, Auteur ; et al., Auteur Année de publication : 2016 Article en page(s) : pp 210 - 224 Note générale : Bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Applications de télédétection
[Termes IGN] appariement d'images
[Termes IGN] blé (céréale)
[Termes IGN] chaleur terrestre
[Termes IGN] Chine
[Termes IGN] humidité du sol
[Termes IGN] image satellite
[Termes IGN] indice foliaire
[Termes IGN] teneur en eau de la végétationRésumé : (Auteur) The North China Plain (NCP) was selected as the study area and the effects of water and heat were analysed to determine the dominant factor affecting winter wheat growth. The mean, minimum and maximum temperatures, precipitation and soil moisture data were selected to analyse the correlations between the leaf area index (the growth indicator) and these factors using long time series half-monthly data (2–5 months) (from 1982 to 2010). The results showed that temperature was the main factor affecting the growth of winter wheat in the NCP. The growth of winter wheat had weak correlations with precipitation and soil moisture and the influence of water on winter wheat growth was smaller than the influence of heat. In the northern part of the NCP, mainly including the north-west region of Shandong Province and the southern region of Hebei Province, irrigation was necessary in late February and early March. Numéro de notice : A2016-108 Affiliation des auteurs : non IGN Thématique : FORET Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1080/10106049.2015.1043357 Date de publication en ligne : 03/08/2015 En ligne : http://www.tandfonline.com/doi/full/10.1080/10106049.2015.1043357 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=80004
in Geocarto international > vol 31 n° 1 - 2 (January - February 2016) . - pp 210 - 224[article]Réservation
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Code-barres Cote Support Localisation Section Disponibilité 059-2016011 RAB Revue Centre de documentation En réserve L003 Disponible La forêt en chiffres et en cartes / Institut national de l'information géographique et forestière (2012 -) (2016)PermalinkMeasurement of the annual biomass increment of the French forests, XYLODENSMAP project [diaporama] / Jean-Michel Leban (2016)PermalinkMicrowave unmixing with video segmentation for inferring broadleaf and needleleaf brightness temperatures and abundances from mixed forest observations / Lingjia Gu in IEEE Transactions on geoscience and remote sensing, vol 54 n° 1 (January 2016)PermalinkDe la modélisation du déterminisme environnemental de la productivité forestière / Jean-Daniel Bontemps (2016)PermalinkUne strate herbacée monopoliste : quelle concurrence vis-à-vis de l’eau pour le peuplement adulte ? / Rémy Gobin in Rendez-vous techniques, n° 48-49 (été automne 2015)Permalink3D leaf water content mapping using terrestrial laser scanner backscatter intensity with radiometric correction / Xi Zhu in ISPRS Journal of photogrammetry and remote sensing, vol 110 (December 2015)PermalinkA Bayesian network-based method to alleviate the ill-posed inverse problem: A case study on leaf area index and canopy water content retrieval / Xingwen Quan in IEEE Transactions on geoscience and remote sensing, vol 53 n° 12 (December 2015)PermalinkA novel transferable individual tree crown delineation model based on Fishing Net Dragging and boundary classification / Tao Liu in ISPRS Journal of photogrammetry and remote sensing, vol 110 (December 2015)PermalinkSegmenting tree crowns from terrestrial and mobile LiDAR data by exploring ecological theories / Shengli Tao in ISPRS Journal of photogrammetry and remote sensing, vol 110 (December 2015)PermalinkTranspiration of four common understorey plant species according to drought intensity in temperate forests / Rémy Gobin in Annals of Forest Science, vol 72 n° 8 (December 2015)PermalinkTree rings reflect growth adjustments and enhanced synchrony among sites in Iberian stone pine (Pinus pinea L.) under climate change / Fabio Natalini in Annals of Forest Science, vol 72 n° 8 (December 2015)PermalinkCombining leaf physiology, hyperspectral imaging and partial least squares-regression (PLS-R) for grapevine water status assessment / Tal Rapaport in ISPRS Journal of photogrammetry and remote sensing, vol 109 (November 2015)PermalinkDiscrimination of deciduous tree species from time series of unmanned aerial system imagery / Jonathan Lisein in Plos one, vol 10 n° 11 (November 2015)PermalinkEvaluating the impact of leaf-on and leaf-off airborne laser scanning data on the estimation of forest inventory attributes with the area-based approach / Joanne C. White in Canadian Journal of Forest Research, vol 45 n° 11 (November 2015)PermalinkModeling of the permittivity of holly leaves in frozen environments / Xiaokang Kou in IEEE Transactions on geoscience and remote sensing, vol 53 n° 11 (November 2015)PermalinkExceedance of critical loads and of critical limits impacts tree nutrition across Europe / Peter Waldner in Annals of Forest Science, vol 72 n° 7 (October 2015)PermalinkA geometric method for wood-leaf separation using terrestrial and simulated Lidar data / Shengli Tao in Photogrammetric Engineering & Remote Sensing, PERS, vol 81 n° 10 (October 2015)PermalinkPhosphorus nutrition of beech (Fagus sylvatica L.) is decreasing in Europe / Ulrike Talkne in Annals of Forest Science, vol 72 n° 7 (October 2015)PermalinkStand density, tree social status and water stress influence allocation in height and diameter growth of Quercus petraea (Liebl.) / Raphaël Trouvé in Tree Physiology, vol 35 n° 10 (October 2015)PermalinkIs the variability of key wood properties linked with the variability of key architectural traits? Case of planted Teak in Togo regarding thinning and provenance / Kodjo Tondjo in Annals of Forest Science, vol 72 n° 6 (September 2015)Permalink