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Genome-wide evolutionary response of European oaks during the Anthropocene / Dounia Saleh in Evolution letters, vol 6 n° 1 (February 2022)  

Public [article]  inEvolution letters > vol 6 n° 1 (February 2022) . - pp 4 - 20 Titre : Genome-wide evolutionary response of European oaks during the Anthropocene Type de document : Article/Communication Auteurs : Dounia Saleh, Auteur ; Jun Chen, Auteur ; Jean-Charles Leple, Auteur ; Thibault Leroy, Auteur ; Laura Truffaut, Auteur ; Benjamin Dencausse, Auteur ; Céline Lalanne, Auteur ; Karine Labadie, Auteur ; Isabelle Lesur, Auteur ; Didier Bert, Auteur ; Frédéric Lagane, Auteur ; François Morneau , Auteur ; Jean-Marc Aury, Auteur ; Christophe Plomion, Auteur ; Martin Lascoux, Auteur ; Antoine Kremer, Auteur Année de publication : 2022 Projets : 3-projet - voir note / Article en page(s) : pp 4 - 20 Note générale : bibliographie This research was supported by the European Research Council through an Advanced Grant (project TREEPEACE # FP7-339728), by France Génomique (project EVOL-OAK, ANR-10-INBS-09-08), and by the French Forest Service (ONF) (INRAE-ONF TREEPEACE contract). Langues : Anglais (eng) Descripteur : [Termes IGN] dix-huitième siècle [Termes IGN] dix-neuvième siècle [Termes IGN] France (géographie physique) [Termes IGN] génétique forestière [Termes IGN] Quercus sessiliflora [Termes IGN] vingt-et-unième siècle [Termes IGN] vingtième siècle [Vedettes matières IGN] Botanique Résumé : (auteur) The pace of tree microevolution during Anthropocene warming is largely unknown. We used a retrospective approach to monitor genomic changes in oak trees since the Little Ice Age (LIA). Allelic frequency changes were assessed from whole-genome pooled sequences for four age-structured cohorts of sessile oak (Quercus petraea) dating back to 1680, in each of three different oak forests in France. The genetic covariances of allelic frequency changes increased between successive time periods, highlighting genome-wide effects of linked selection. We found imprints of parallel linked selection in the three forests during the late LIA, and a shift of selection during more recent time periods of the Anthropocene. The changes in allelic covariances within and between forests mirrored the documented changes in the occurrence of extreme events (droughts and frosts) over the last 300 years. The genomic regions with the highest covariances were enriched in genes involved in plant responses to pathogens and abiotic stresses (temperature and drought). These responses are consistent with the reported sequence of frost (or drought) and disease damage ultimately leading to the oak dieback after extreme events. They provide support for adaptive evolution of long-lived species during recent climatic changes. Although we acknowledge that other sources (e.g., gene flow, generation overlap) may have contributed to temporal covariances of allelic frequency changes, the consistent and correlated response across the three forests lends support to the existence of a systematic driving force such as natural selection. Numéro de notice : A2022-076 Affiliation des auteurs : IGN+Ext (2020- ) Thématique : BIODIVERSITE/FORET Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1002/evl3.269 Date de publication en ligne : 05/01/2022 En ligne : https://doi.org/10.1002/evl3.269 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=99572 [article]

Forest tree genomics: 10 achievements from the past 10 years and future prospects / Christophe Plomion in Annals of Forest Science, vol 73 n° 1 (March 2016)  

Public [article]  inAnnals of Forest Science > vol 73 n° 1 (March 2016) . - pp 77 - 103 Titre : Forest tree genomics: 10 achievements from the past 10 years and future prospects Type de document : Article/Communication Auteurs : Christophe Plomion, Auteur ; Catherine Bastien, Auteur ; Marie-Béatrice Bogeat-Triboulot, Auteur ; et al., Auteur Année de publication : 2016 Article en page(s) : pp 77 - 103 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Végétation [Termes IGN] arbre (flore) [Termes IGN] biologie [Termes IGN] état de conservation [Termes IGN] forêt [Termes IGN] génétique [Termes IGN] reproduction (végétation) Résumé : (auteur) Key message : This review highlights some of the discoveries and applications made possible by “omics” technologies over the last 10 years and provides perspectives for pioneering research to increase our understanding of tree biology. Context : A decade after the first forest tree genome sequence was released into the public domain, the rapidly evolving genomics and bioinformatics toolbox has advanced our understanding of the structure, functioning, and evolution of forest tree genomes. Aims and methods : This review highlights some of the discoveries and applications that “omics” technologies have made possible for forest trees over the past 10 years. Results : In this review, we start by our current understanding of genome evolution and intricacies of gene regulation for reproduction, development, and responses to biotic and abiotic stresses. We then skim over advances in interactome analysis and epigenomics, the knowledge of the extent of genetic variation within and between species, revealing micro- and macro-evolutionary processes and species history, together with the complex architecture of quantitative traits. We finally end with applications in genetic resource conservation and breeding. Conclusion : The knowledge gained through the use of these technologies has a huge potential impact for adapting forests to the main challenges they will have to face: changing demand from ecosystem services with potentially conflicting strategies in terms of conservation and use, as well as climate changes and associated threats. Genomics will undoubtedly play a major role over the next decade and beyond, not only to further understand the mechanisms underlying adaptation and evolution but also to develop and implement innovative management and policy actions to preserve the adaptability of natural forests and intensively managed plantations. Numéro de notice : A2016-187 Affiliation des auteurs : non IGN Thématique : FORET Nature : Article DOI : 10.1007/s13595-015-0488-3 Date de publication en ligne : 01/03/2016 En ligne : https://doi.org/10.1007/s13595-015-0488-3 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=80614 [article]