Centre de documentation
scientifique

Genome-wide evolutionary response of European oaks during the Anthropocene / Dounia Saleh in Evolution letters, vol 6 n° 1 (February 2022)  

Public [article]  inEvolution letters > vol 6 n° 1 (February 2022) . - pp 4 - 20 Titre : Genome-wide evolutionary response of European oaks during the Anthropocene Type de document : Article/Communication Auteurs : Dounia Saleh, Auteur ; Jun Chen, Auteur ; Jean-Charles Leple, Auteur ; Thibault Leroy, Auteur ; Laura Truffaut, Auteur ; Benjamin Dencausse, Auteur ; Céline Lalanne, Auteur ; Karine Labadie, Auteur ; Isabelle Lesur, Auteur ; Didier Bert, Auteur ; Frédéric Lagane, Auteur ; François Morneau , Auteur ; Jean-Marc Aury, Auteur ; Christophe Plomion, Auteur ; Martin Lascoux, Auteur ; Antoine Kremer, Auteur Année de publication : 2022 Projets : 3-projet - voir note / Article en page(s) : pp 4 - 20 Note générale : bibliographie This research was supported by the European Research Council through an Advanced Grant (project TREEPEACE # FP7-339728), by France Génomique (project EVOL-OAK, ANR-10-INBS-09-08), and by the French Forest Service (ONF) (INRAE-ONF TREEPEACE contract). Langues : Anglais (eng) Descripteur : [Termes IGN] dix-huitième siècle [Termes IGN] dix-neuvième siècle [Termes IGN] France (géographie physique) [Termes IGN] génétique forestière [Termes IGN] Quercus sessiliflora [Termes IGN] vingt-et-unième siècle [Termes IGN] vingtième siècle [Vedettes matières IGN] Botanique Résumé : (auteur) The pace of tree microevolution during Anthropocene warming is largely unknown. We used a retrospective approach to monitor genomic changes in oak trees since the Little Ice Age (LIA). Allelic frequency changes were assessed from whole-genome pooled sequences for four age-structured cohorts of sessile oak (Quercus petraea) dating back to 1680, in each of three different oak forests in France. The genetic covariances of allelic frequency changes increased between successive time periods, highlighting genome-wide effects of linked selection. We found imprints of parallel linked selection in the three forests during the late LIA, and a shift of selection during more recent time periods of the Anthropocene. The changes in allelic covariances within and between forests mirrored the documented changes in the occurrence of extreme events (droughts and frosts) over the last 300 years. The genomic regions with the highest covariances were enriched in genes involved in plant responses to pathogens and abiotic stresses (temperature and drought). These responses are consistent with the reported sequence of frost (or drought) and disease damage ultimately leading to the oak dieback after extreme events. They provide support for adaptive evolution of long-lived species during recent climatic changes. Although we acknowledge that other sources (e.g., gene flow, generation overlap) may have contributed to temporal covariances of allelic frequency changes, the consistent and correlated response across the three forests lends support to the existence of a systematic driving force such as natural selection. Numéro de notice : A2022-076 Affiliation des auteurs : IGN+Ext (2020- ) Thématique : BIODIVERSITE/FORET Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1002/evl3.269 Date de publication en ligne : 05/01/2022 En ligne : https://doi.org/10.1002/evl3.269 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=99572 [article]

Genome-wide evolutionary response of European oaks since the Little Ice Age / Dounia Saleh (2021)  

Public contenu dans BioRxiv (201x)   Titre : Genome-wide evolutionary response of European oaks since the Little Ice Age Type de document : Article/Communication Auteurs : Dounia Saleh, Auteur ; Jun Chen, Auteur ; Jean-Charles Leple, Auteur ; Thibault Leroy, Auteur ; Laura Truffaut, Auteur ; Benjamin Dencausse, Auteur ; et al., Auteur ; François Morneau , Auteur Editeur : Paris [France] : Institut national de recherche pour l’agriculture, l’alimentation et l’environnement INRAE (2020-) Année de publication : 2021 Projets : 3-projet - voir note / Importance : 35 p. Note générale : bibliographie This research was supported by the European Research Council through an Advanced Grant (project TREEPEACE # FP7-339728), by France Génomique (project EVOL-OAK, ANR-10-INBS-09–08), and by the French Forest Service (ONF) (INRAE-ONF TREEPEACE contract). Langues : Anglais (eng) Descripteur : [Termes IGN] dix-huitième siècle [Termes IGN] dix-neuvième siècle [Termes IGN] dix-septième siècle [Termes IGN] France (géographie physique) [Termes IGN] génétique forestière [Termes IGN] Quercus sessiliflora [Termes IGN] quinzième siècle [Termes IGN] seizième siècle [Vedettes matières IGN] Botanique Résumé : (auteur) The pace of tree microevolution during Anthropocene warming is largely unknown. We used a retrospective approach to monitor genomic changes in oak trees since the Little Ice Age (LIA). Allelic frequency changes were assessed from whole-genome pooled sequences for four age-structured cohorts of sessile oak (Quercus petraea) dating back to 1680, in each of three different oak forests in France. The genetic covariances of allelic frequency changes increased between successive time periods, highlighting genome-wide effects of linked selection. We found imprints of convergent linked selection in the three forests during the late LIA, and a shift of selection during more recent time periods. The changes in allelic covariances within and between forests mirrored the documented changes in the occurrence of extreme events (droughts and frosts) over the last three hundred years. The genomic regions with the highest covariances were enriched in genes involved in plant responses to pathogens and abiotic stresses (temperature and drought). These responses are consistent with the reported sequence of frost (or drought) and disease damage ultimately leading to the oak dieback after extreme events. Our results therefore provide evidence of selection operating on long-lived species during recent climatic changes. Numéro de notice : P2021-004 Affiliation des auteurs : IGN+Ext (2020- ) Thématique : FORET Nature : Preprint nature-HAL : Préprint DOI : 10.1101/2021.05.25.445558 Date de publication en ligne : 27/05/2021 En ligne : https://doi.org/10.1101/2021.05.25.445558 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=97846