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Deep learning in denoising of micro-computed tomography images of rock samples / Mikhail Sidorenko in Computers & geosciences, vol 151 (June 2021)  

Public [article]  inComputers & geosciences > vol 151 (June 2021) . - n° 104716 Titre : Deep learning in denoising of micro-computed tomography images of rock samples Type de document : Article/Communication Auteurs : Mikhail Sidorenko, Auteur ; Denis Orlov, Auteur ; Mohammad Ebadi, Auteur ; et al., Auteur Année de publication : 2021 Article en page(s) : n° 104716 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Traitement d'image [Termes IGN] accentuation d'image [Termes IGN] apprentissage profond [Termes IGN] classification dirigée [Termes IGN] classification par réseau neuronal convolutif [Termes IGN] filtrage du bruit [Termes IGN] filtre passe-bande [Termes IGN] roche [Termes IGN] tomographie Résumé : (auteur) Nowadays, the advantages of Digital Rock Physics (DRP) are well known and widely applied in comprehensive core analysis. It is also known that the quality of the 3D pore scale model drastically influences the results of rock properties simulation, which makes the preprocessing stage of DRP very important. In this work, we consider the application of Deep Convolutional Neural Networks (CNNs) for the preprocessing of CT images, specifically for denoising, in two setups - conventional fully-supervised learning and the self-supervised learning, when the only available data is the noisy images. To train CNNs in a supervised setup, we use images processed by a combination of bilateral and bandpass filters. We trained CNNs of the same architecture with different loss functions to find out how the choice of a loss function influences the model's performance. Some of the obtained CNNs yielded the highest quality in terms of full-reference and no-reference metrics and significant histogram effect (bimodal intensity distribution). Images denoised with these models were qualitatively and quantitatively better than the reference “ground truth” images used for training. We use the Deep Image Prior algorithm to train denoising models in a self-supervised setup. The obtained models are much better than ones obtained in fully-supervised setup, but are too slow, as they are optimization-based rather than feed-forward. Such an algorithm can be used in the dataset generation for feed-forward meta-models. These results could help to develop an AI-based instrument to build high-quality 3D segmented models of rocks for DRP applications. Numéro de notice : A2021-389 Affiliation des auteurs : non IGN Thématique : IMAGERIE/INFORMATIQUE Nature : Article DOI : 10.1016/j.cageo.2021.104716 date de publication en ligne : 02/03/2021 En ligne : https://doi.org/10.1016/j.cageo.2021.104716 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=97672 [article]

Direct analysis in real-time (DART) time-of-flight mass spectrometry (TOFMS) of wood reveals distinct chemical signatures of two species of Afzelia / Peter Kitin in Annals of Forest Science [en ligne], vol 78 n° 2 (June 2021)  

Public [article]  inAnnals of Forest Science [en ligne] > vol 78 n° 2 (June 2021) . - Article 31 Titre : Direct analysis in real-time (DART) time-of-flight mass spectrometry (TOFMS) of wood reveals distinct chemical signatures of two species of Afzelia Type de document : Article/Communication Auteurs : Peter Kitin, Auteur ; Edgard Espinoza, Auteur ; Hans Beeckman, Auteur ; et al., Auteur Année de publication : 2021 Article en page(s) : Article 31 Note générale : Bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Traitement d'image [Termes IGN] abattage (sylviculture) [Termes IGN] Afzelia (genre) [Termes IGN] analyse discriminante [Termes IGN] apprentissage non-dirigé [Termes IGN] bois [Termes IGN] espèce végétale [Termes IGN] forêt tropicale [Termes IGN] identification de plantes [Termes IGN] signature spectrale [Termes IGN] spectrométrie [Termes IGN] taxinomie [Termes IGN] temps réel Résumé : (Auteur) Distinct chemical fingerprints of the wood of Afzelia pachyloba and A. bipindensis demonstrated an effective method for identifying these two commercially important species. Direct analysis in real-time (DART) time-of-flight mass spectrometry (TOFMS) allowed high-throughput examination of chemotypes with vast potential in taxonomic, ecological, and forensic research of wood. Context : Afzelia is a genus of valuable tropical timber trees. Accurate identification of wood is required for the prevention of illicit timber trade as well as for certification purposes in the forest and wood products industry. For many years, particular interest has been focused on attempts to distinguish the wood of A. bipindensis Harms from A. pachyloba Harms due to substantial differences in the commercial values of these two species. Aims : We investigated if wood chemical signatures and microscopy could identify the wood of A. bipindensis and A. pachyloba. Methods : We used two approaches, namely metabolome profiling by direct analysis in real-time (DART) time-of-flight mass spectrometry (TOFMS) and wood microstructure by light microscopy and SEM. In all, we analyzed samples from 89 trees of A. bipindensis, and A. pachyloba. Results : The two species could not be separated by the IAWA standard microscopic wood features. SEM analysis showed considerable variation in the morphology of vestured pits; however, this variation was not species-specific. In contrast, DART-TOFMS followed by unsupervised statistics (Discriminant Analysis of Principal Components) showed distinct metabolome signatures of the two species. Conclusion : DART-TOFMS provides a rapid method for wood identification that can be easily applied to small heartwood samples. Time- and cost-effective classification of wood chemotypes by DART-TOFMS can have potential applications in various research questions in forestry, wood science, tree-ecophysiology, and forensics. Numéro de notice : A2021-327 Affiliation des auteurs : non IGN Thématique : FORET/IMAGERIE Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1007/s13595-020-01024-1 date de publication en ligne : 31/03/2021 En ligne : https://doi.org/10.1007/s13595-020-01024-1 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=97488 [article]

Multiple convolutional features in Siamese networks for object tracking / Zhenxi Li in Machine Vision and Applications, vol 32 n° 3 (May 2021)  

Public [article]  inMachine Vision and Applications > vol 32 n° 3 (May 2021) . - n° 59 Titre : Multiple convolutional features in Siamese networks for object tracking Type de document : Article/Communication Auteurs : Zhenxi Li, Auteur ; Guillaume-Alexandre Bilodeau, Auteur ; Wassim Bouachir, Auteur Année de publication : 2021 Article en page(s) : n° 59 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Traitement d'image [Termes IGN] approche hiérarchique [Termes IGN] classification par réseau neuronal convolutif [Termes IGN] extraction de traits caractéristiques [Termes IGN] poursuite de cible [Termes IGN] reconnaissance d'objets [Termes IGN] réseau neuronal siamois Résumé : (auteur) Siamese trackers demonstrated high performance in object tracking due to their balance between accuracy and speed. Unlike classification-based CNNs, deep similarity networks are specifically designed to address the image similarity problem and thus are inherently more appropriate for the tracking task. However, Siamese trackers mainly use the last convolutional layers for similarity analysis and target search, which restricts their performance. In this paper, we argue that using a single convolutional layer as feature representation is not an optimal choice in a deep similarity framework. We present a Multiple Features-Siamese Tracker (MFST), a novel tracking algorithm exploiting several hierarchical feature maps for robust tracking. Since convolutional layers provide several abstraction levels in characterizing an object, fusing hierarchical features allows to obtain a richer and more efficient representation of the target. Moreover, we handle the target appearance variations by calibrating the deep features extracted from two different CNN models. Based on this advanced feature representation, our method achieves high tracking accuracy, while outperforming the standard siamese tracker on object tracking benchmarks. The source code and trained models are available at https://github.com/zhenxili96/MFST. Numéro de notice : A2021-470 Affiliation des auteurs : non IGN Thématique : IMAGERIE Nature : Article DOI : 10.1007/s00138-021-01185-7 date de publication en ligne : 11/03/2021 En ligne : https://doi.org/10.1007/s00138-021-01185-7 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=97903 [article]

A stacked dense denoising–segmentation network for undersampled tomograms and knowledge transfer using synthetic tomograms / Dimitrios Bellos in Machine Vision and Applications, vol 32 n° 3 (May 2021)  

Public [article]  inMachine Vision and Applications > vol 32 n° 3 (May 2021) . - n° 75 Titre : A stacked dense denoising–segmentation network for undersampled tomograms and knowledge transfer using synthetic tomograms Type de document : Article/Communication Auteurs : Dimitrios Bellos, Auteur ; Mark Basham, Auteur ; Tony Pridmore, Auteur ; et al., Auteur Année de publication : 2021 Article en page(s) : n° 75 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Traitement d'image [Termes IGN] acquisition de connaissances [Termes IGN] apprentissage profond [Termes IGN] échantillonnage [Termes IGN] filtrage du bruit [Termes IGN] rapport signal sur bruit [Termes IGN] rayon X [Termes IGN] reconstruction d'image [Termes IGN] segmentation sémantique [Termes IGN] série temporelle [Termes IGN] tomographie Résumé : (auteur) Over recent years, many approaches have been proposed for the denoising or semantic segmentation of X-ray computed tomography (CT) scans. In most cases, high-quality CT reconstructions are used; however, such reconstructions are not always available. When the X-ray exposure time has to be limited, undersampled tomograms (in terms of their component projections) are attained. This low number of projections offers low-quality reconstructions that are difficult to segment. Here, we consider CT time-series (i.e. 4D data), where the limited time for capturing fast-occurring temporal events results in the time-series tomograms being necessarily undersampled. Fortunately, in these collections, it is common practice to obtain representative highly sampled tomograms before or after the time-critical portion of the experiment. In this paper, we propose an end-to-end network that can learn to denoise and segment the time-series’ undersampled CTs, by training with the earlier highly sampled representative CTs. Our single network can offer two desired outputs while only training once, with the denoised output improving the accuracy of the final segmentation. Our method is able to outperform state-of-the-art methods in the task of semantic segmentation and offer comparable results in regard to denoising. Additionally, we propose a knowledge transfer scheme using synthetic tomograms. This not only allows accurate segmentation and denoising using less real-world data, but also increases segmentation accuracy. Finally, we make our datasets, as well as the code, publicly available. Numéro de notice : A2021-456 Affiliation des auteurs : non IGN Thématique : IMAGERIE Nature : Article DOI : 10.1007/s00138-021-01196-4 date de publication en ligne : 27/04/2021 En ligne : https://doi.org/10.1007/s00138-021-01196-4 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=97902 [article]

Parsing of urban facades from 3D point clouds based on a novel multi-view domain / Wei Wang in Photogrammetric Engineering & Remote Sensing, PERS, vol 87 n° 4 (April 2021)  

Public [article]  inPhotogrammetric Engineering & Remote Sensing, PERS > vol 87 n° 4 (April 2021) . - pp 283-293 Titre : Parsing of urban facades from 3D point clouds based on a novel multi-view domain Type de document : Article/Communication Auteurs : Wei Wang, Auteur ; Yuan Xu, Auteur ; Yingchao Ren, Auteur ; Gang Wang, Auteur Année de publication : 2021 Article en page(s) : pp 283-293 Note générale : Bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Traitement d'image [Termes IGN] analyse comparative [Termes IGN] apprentissage profond [Termes IGN] données localisées 3D [Termes IGN] façade [Termes IGN] fusion de données [Termes IGN] milieu urbain [Termes IGN] précision de la classification [Termes IGN] segmentation hiérarchique [Termes IGN] segmentation multi-échelle [Termes IGN] semis de points Résumé : (Auteur) Recently, performance improvement in facade parsing from 3D point clouds has been brought about by designing more complex network structures, which cost huge computing resources and do not take full advantage of prior knowledge of facade structure. Instead, from the perspective of data distribution, we construct a new hierarchical mesh multi-view data domain based on the characteristics of facade objects to achieve fusion of deep-learning models and prior knowledge, thereby significantly improving segmentation accuracy. We comprehensively evaluate the current mainstream method on the RueMonge 2014 data set and demonstrate the superiority of our method. The mean intersection-over-union index on the facade-parsing task reached 76.41%, which is 2.75% higher than the current best result. In addition, through comparative experiments, the reasons for the performance improvement of the proposed method are further analyzed. Numéro de notice : A2021-333 Affiliation des auteurs : non IGN Thématique : IMAGERIE Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.14358/PERS.87.4.283 date de publication en ligne : 01/04/2021 En ligne : https://doi.org/10.14358/PERS.87.4.283 Format de la ressource électronique : URL Article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=97531 [article]

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