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Counting of grapevine berries in images via semantic segmentation using convolutional neural networks / Laura Zabawa in ISPRS Journal of photogrammetry and remote sensing, vol 164 (June 2020)  

Public [article]  inISPRS Journal of photogrammetry and remote sensing > vol 164 (June 2020) . - pp 73 - 83 Titre : Counting of grapevine berries in images via semantic segmentation using convolutional neural networks Type de document : Article/Communication Auteurs : Laura Zabawa, Auteur ; Anna Kicherer, Auteur ; Lasse Klingbeil, Auteur ; et al., Auteur Année de publication : 2020 Article en page(s) : pp 73 - 83 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Applications de télédétection [Termes descripteurs IGN] apprentissage profond [Termes descripteurs IGN] classification par réseau neuronal convolutif [Termes descripteurs IGN] comptage [Termes descripteurs IGN] échantillon [Termes descripteurs IGN] extraction de traits caractéristiques [Termes descripteurs IGN] extraction semi-automatique [Termes descripteurs IGN] régression [Termes descripteurs IGN] rendement agricole [Termes descripteurs IGN] segmentation sémantique [Termes descripteurs IGN] traitement d'image [Termes descripteurs IGN] viticulture Résumé : (auteur) The extraction of phenotypic traits is often very time and labour intensive. Especially the investigation in viticulture is restricted to an on-site analysis due to the perennial nature of grapevine. Traditionally skilled experts examine small samples and extrapolate the results to a whole plot. Thereby different grapevine varieties and training systems, e.g. vertical shoot positioning (VSP) and semi minimal pruned hedges (SMPH) pose different challenges. In this paper we present an objective framework based on automatic image analysis which works on two different training systems. The images are collected semi automatic by a camera system which is installed in a modified grape harvester. The system produces overlapping images from the sides of the plants. Our framework uses a convolutional neural network to detect single berries in images by performing a semantic segmentation. Each berry is then counted with a connected component algorithm. We compare our results with the Mask-RCNN, a state-of-the-art network for instance segmentation and with a regression approach for counting. The experiments presented in this paper show that we are able to detect green berries in images despite of different training systems. We achieve an accuracy for the berry detection of 94.0% in the VSP and 85.6% in the SMPH. Numéro de notice : A2020-252 Thématique : IMAGERIE Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1016/j.isprsjprs.2020.04.002 date de publication en ligne : 22/04/2020 En ligne : https://doi.org/10.1016/j.isprsjprs.2020.04.002 Format de la ressource électronique : url article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=94996 [article]

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Discriminant analysis for lodging severity classification in wheat using RADARSAT-2 and Sentinel-1 data / Sugandh Chauhan in ISPRS Journal of photogrammetry and remote sensing, vol 164 (June 2020)  

Public [article]  inISPRS Journal of photogrammetry and remote sensing > vol 164 (June 2020) . - pp 138 - 151 Titre : Discriminant analysis for lodging severity classification in wheat using RADARSAT-2 and Sentinel-1 data Type de document : Article/Communication Auteurs : Sugandh Chauhan, Auteur ; Roshanak Darvishzadeh, Auteur ; Mirco Boschetti, Auteur ; Andrew Nelson, Auteur Année de publication : 2020 Article en page(s) : pp 138 - 151 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Applications de télédétection [Termes descripteurs IGN] agrégation [Termes descripteurs IGN] analyse diachronique [Termes descripteurs IGN] analyse discriminante [Termes descripteurs IGN] blé (céréale) [Termes descripteurs IGN] courbure [Termes descripteurs IGN] gestion prévisionnelle [Termes descripteurs IGN] image Radarsat [Termes descripteurs IGN] image Sentinel-SAR [Termes descripteurs IGN] Italie [Termes descripteurs IGN] matrice de confusion [Termes descripteurs IGN] méthode des moindres carrés [Termes descripteurs IGN] rendement agricole [Termes descripteurs IGN] surveillance agricole Résumé : (auteur) Crop lodging - the bending of crop stems from their upright position or the failure of root-soil anchorage systems - is a major yield-reducing factor in wheat and causes deterioration of grain quality. The severity of lodging can be measured by a lodging score (LS)- an index calculated from the crop angle of inclination (CAI) and crop lodged area (LA). LS is difficult and time consuming to measure manually meaning that information on lodging occurrence and severity is limited and sparse. Remote sensing-based estimates of LS can provide more timely, synoptic and reliable information on crop lodging across vast areas. This information could improve estimates of crop yield losses, inform insurance loss adjusters and influence management decisions for subsequent seasons. This research - conducted in the 600 ha wheat sown area in the Bonifiche Ferraresi farm, located in Jolanda di Savoia, Ferrara, Italy - evaluated the performance of RADARSAT-2 and Sentinel-1 data to discriminate and classify lodging severity based on field measured LS. We measured temporal crop status characteristics related to lodging (e.g. lodged area, CAI, crop height) and collected relevant meteorological data (wind speed and rainfall) throughout May-June 2018. These field measurements were used to distinguish healthy (He) wheat from lodged wheat with different degrees of lodging severity (moderate, severe and very severe). We acquired multi-incidence angle (FQ8-27° and FQ21-41°) RADARSAT-2 and Sentinel-1 (40°) images and derived multiple metrics from them to discriminate and classify lodging severity. As a part of our data exploration, we performed a correlation analysis between the image-based metrics and LS. Next, a multi-temporal discriminant analysis approach, including a partial least squares (PLS-DA) method, was developed to classify lodging severities. We used the area under the curve-receiver operating characteristics (AUC-ROC) and confusion matrices to evaluate the accuracy of the PLS-DA classification models. Results show that (1) volume scattering components were highly correlated with LS at low incidence angles while double and surface scattering was more prevalent at high incidence angles; (2) lodging severity was best classified using low incidence angle R-FQ8 data (overall accuracy 72%) and (3) the Sentinel-1 data-based classification model was able to correctly identify 60% of the lodging severity cases in the study site. The results from this first study on classifying lodging severity using satellite-based SAR platforms suggests that SAR-based metrics can capture a substantial proportion of the observed variation in lodging severity, which is important in the context of operational crop lodging assessment in particular, and sustainable agriculture in general. Numéro de notice : A2020-276 Thématique : IMAGERIE Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1016/j.isprsjprs.2020.04.012 date de publication en ligne : 29/04/2020 En ligne : https://doi.org/10.1016/j.isprsjprs.2020.04.012 Format de la ressource électronique : url article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=95087 [article]

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Above-ground biomass estimation and yield prediction in potato by using UAV-based RGB and hyperspectral imaging / Bo Li in ISPRS Journal of photogrammetry and remote sensing, vol 162 (April 2020)  

Public [article]  inISPRS Journal of photogrammetry and remote sensing > vol 162 (April 2020) . - pp 161 -1 72 Titre : Above-ground biomass estimation and yield prediction in potato by using UAV-based RGB and hyperspectral imaging Type de document : Article/Communication Auteurs : Bo Li, Auteur ; Xiangming Xu, Auteur ; Li Zhang, Auteur Année de publication : 2020 Article en page(s) : pp 161 -1 72 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Applications de télédétection [Termes descripteurs IGN] biomasse aérienne [Termes descripteurs IGN] classification par forêts aléatoires [Termes descripteurs IGN] couvert végétal [Termes descripteurs IGN] hauteur de la végétation [Termes descripteurs IGN] image de drone [Termes descripteurs IGN] image hyperspectrale [Termes descripteurs IGN] image RVB [Termes descripteurs IGN] indice de végétation [Termes descripteurs IGN] pomme de terre [Termes descripteurs IGN] régression des moindres carrés partiels [Termes descripteurs IGN] rendement agricole Résumé : (auteur) Rapid and accurate biomass and yield estimation facilitates efficient plant phenotyping and site-specific crop management. A low altitude unmanned aerial vehicle (UAV) was used to acquire RGB and hyperspectral imaging data for a potato crop canopy at two growth stages to estimate the above-ground biomass and predict crop yield. Field experiments included six cultivars and multiple treatments of nitrogen, potassium, and mixed compound fertilisers. Crop height was estimated using the difference between digital surface model and digital elevation models derived from RGB imagery. Combining with two narrow-band vegetation indices selected by the RReliefF feature selection algorithm. Random Forest regression models demonstrated high prediction accuracy for both fresh and dry above-ground biomass, with a coefficient of determination (r2) > 0.90. Crop yield was predicted using four narrow-band vegetation indices and crop height (r2 = 0.63) with imagery data obtained 90 days after planting. A Partial Least Squares regression model based on the full wavelength spectra demonstrated improved yield prediction (r2 = 0.81). This study demonstrated the merits of UAV-based RGB and hyperspectral imaging for estimating the above-ground biomass and yield of potato crops, which can be used to assist in site-specific crop management. Numéro de notice : A2020-125 Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1016/j.isprsjprs.2020.02.013 date de publication en ligne : 28/02/2020 En ligne : https://doi.org/10.1016/j.isprsjprs.2020.02.013 Format de la ressource électronique : url article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=94750 [article]

Estimating wheat yields in Australia using climate records, satellite image time series and machine learning methods / Elisa Kamir in ISPRS Journal of photogrammetry and remote sensing, vol 160 (February 2020)  

Public [article]  inISPRS Journal of photogrammetry and remote sensing > vol 160 (February 2020) . - pp 124 - 135 Titre : Estimating wheat yields in Australia using climate records, satellite image time series and machine learning methods Type de document : Article/Communication Auteurs : Elisa Kamir, Auteur ; François Waldner, Auteur ; Zvi Hochman, Auteur Année de publication : 2020 Article en page(s) : pp 124 - 135 Note générale : Bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Applications de télédétection [Termes descripteurs IGN] apprentissage automatique [Termes descripteurs IGN] Australie [Termes descripteurs IGN] blé (céréale) [Termes descripteurs IGN] carte agricole [Termes descripteurs IGN] climat [Termes descripteurs IGN] estimation de précision [Termes descripteurs IGN] fonction de base radiale [Termes descripteurs IGN] image satellite [Termes descripteurs IGN] modèle de croissance [Termes descripteurs IGN] modèle non linéaire [Termes descripteurs IGN] Normalized Difference Vegetation Index [Termes descripteurs IGN] régression [Termes descripteurs IGN] rendement agricole [Termes descripteurs IGN] série temporelle [Termes descripteurs IGN] variation saisonnière Résumé : (Auteur) Closing the yield gap between actual and potential wheat yields in Australia is important to meet the growing global demand for food. The identification of hotspots of the yield gap, where the potential for improvement is the greatest, is a necessary step towards this goal. While crop growth models are well suited to quantify potential yields, they lack the ability to provide accurate large-scale estimates of actual yields, owing to the sheer quantity of data they require for parameterisation. In this context, we sought to provide accurate estimates of actual wheat yields across the Australian wheat belt based on machine-learning regression methods, climate records and satellite image time series. Out of nine base learners and two ensembles, support vector regression with radial basis function emerged as the single best learner (root mean square error of 0.55 t ha−1 and R2 of 0.77 at the pixel level). At national scale, this model explained 73% of the yield variability observed across statistical units. Benchmark approaches based on peak Normalised Difference Vegetation Index (NDVI) and on a harvest index were largely outperformed by the machine-learning regression models (R2  Numéro de notice : A2020-046 Thématique : IMAGERIE Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1016/j.isprsjprs.2019.11.008 date de publication en ligne : 20/12/2019 En ligne : https://doi.org/10.1016/j.isprsjprs.2019.11.008 Format de la ressource électronique : URL Article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=94556 [article]

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Three-dimensional photogrammetric mapping of cotton bolls in situ based on point cloud segmentation and clustering / Shangpeng Sun in ISPRS Journal of photogrammetry and remote sensing, vol 160 (February 2020)  

Public [article]  inISPRS Journal of photogrammetry and remote sensing > vol 160 (February 2020) . - pp 195 - 207 Titre : Three-dimensional photogrammetric mapping of cotton bolls in situ based on point cloud segmentation and clustering Type de document : Article/Communication Auteurs : Shangpeng Sun, Auteur ; Changying Li, Auteur ; Peng Wah Chee, Auteur ; et al., Auteur Année de publication : 2020 Article en page(s) : pp 195 - 207 Note générale : Bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Applications photogrammétriques [Termes descripteurs IGN] cartographie 3D [Termes descripteurs IGN] classification basée sur les régions [Termes descripteurs IGN] distribution spatiale [Termes descripteurs IGN] données lidar [Termes descripteurs IGN] données localisées 3D [Termes descripteurs IGN] extraction de la végétation [Termes descripteurs IGN] gestion de production [Termes descripteurs IGN] Gossypium (genre) [Termes descripteurs IGN] phénologie [Termes descripteurs IGN] rendement agricole [Termes descripteurs IGN] segmentation d'image [Termes descripteurs IGN] semis de points [Termes descripteurs IGN] structure-from-motion [Termes descripteurs IGN] surveillance de la végétation Résumé : (Auteur) Three-dimensional high throughput plant phenotyping techniques provide an opportunity to measure plant organ-level traits which can be highly useful to plant breeders. The number and locations of cotton bolls, which are the fruit of cotton plants and an important component of fiber yield, are arguably among the most important phenotypic traits but are complex to quantify manually. Hence, there is a need for effective and efficient cotton boll phenotyping solutions to support breeding research and monitor the crop yield leading to better production management systems. We developed a novel methodology for 3D cotton boll mapping within a plot in situ. Point clouds were reconstructed from multi-view images using the structure from motion algorithm. The method used a region-based classification algorithm that successfully accounted for noise due to sunlight. The developed density-based clustering method could estimate boll counts for this situation, in which bolls were in direct contact with other bolls. By applying the method to point clouds from 30 plots of cotton plants, boll counts, boll volume and position data were derived. The average accuracy of boll counting was up to 90% and the R2 values between fiber yield and boll number, as well as fiber yield and boll volume were 0.87 and 0.66, respectively. The 3D boll spatial distribution could also be analyzed using this method. This method, which was low-cost and provided improved site-specific data on cotton bolls, can also be applied to other plant/fruit mapping analysis after some modification. Numéro de notice : A2020-048 Thématique : IMAGERIE Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1016/j.isprsjprs.2019.12.011 date de publication en ligne : 25/12/2019 En ligne : https://doi.org/10.1016/j.isprsjprs.2019.12.011 Format de la ressource électronique : URL Article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=94561 [article]

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Spatio-Temporal Prediction of the Epidemic Spread of Dangerous Pathogens Using Machine Learning Methods / Wolfgang B. Hamer in ISPRS International journal of geo-information, Vol 9 n° 1 (January 2020)  

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Automatic canola mapping using time series of Sentinel 2 images / Davoud Ashourloo in ISPRS Journal of photogrammetry and remote sensing, vol 156 (October 2019)  

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Détection de changement par imagerie radar sur les zones naturelles et agricoles en milieu tropical / Jérôme Lebreton (2018) 

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Imagerie radar en ondes millimétriques appliquée à la viticulture / Dominique Henry (2018)  

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Using geographically weighted regression kriging for crop yield mapping in West Africa / Muhammad Imran in International journal of geographical information science IJGIS, vol 29 n° 2 (February 2015)  

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Crop yield estimation based on unsupervised linear unmixing of multidate hyperspectral imagery / B. Luo in IEEE Transactions on geoscience and remote sensing, vol 51 n° 1 Tome 1 (January 2013)  

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Un modèle de prévision de rendement de la canne à sucre basé sur des images satellitaires SPOT : l'exemple de la Réunion / N. Boyer in Revue Française de Photogrammétrie et de Télédétection, n° 197 (Juin 2012)

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The early explanatory power of NDVI in crop yield modelling / L. Wall in International Journal of Remote Sensing IJRS, vol 29 n° 7 (April 2008)

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MARS [Monitoring Agriculture with Remote Sensing] stat action of the European Commission: crop and yield monitoring activities / G. Genovese in Geoinformatics, vol 10 n° 4 (01/06/2007)

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Within-field wheat yield prediction from Ikonos data: a new matrix approach / E.A. Enclona in International Journal of Remote Sensing IJRS, vol 25 n° 2 (January 2004)

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