Centre dedocumentation
scientifique

Genetic variation of introduced red oak (Quercus rubra) stands in Germany compared to North American populations / Tim Pettenkofer in European Journal of Forest Research, vol 139 n° 2 (April 2020)  

Public [article]  inEuropean Journal of Forest Research > vol 139 n° 2 (April 2020) . - pp 321 – 331 Titre : Genetic variation of introduced red oak (Quercus rubra) stands in Germany compared to North American populations Type de document : Article/Communication Auteurs : Tim Pettenkofer, Auteur ; Reiner Finkeldey, Auteur ; Markus Müller, Auteur ; et al., Auteur Année de publication : 2020 Article en page(s) : pp 321 – 331 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Termes descripteurs IGN] Allemagne [Termes descripteurs IGN] Amérique du nord [Termes descripteurs IGN] analyse comparative [Termes descripteurs IGN] génétique forestière [Termes descripteurs IGN] quercus rubra [Termes descripteurs IGN] variation Résumé : (auteur) Although Northern red oak (Quercus rubra L.) is the most important introduced deciduous tree species in Germany, only little is known about its genetic variation. For the first time, we describe patterns of neutral and potentially adaptive nuclear genetic variation in Northern red oak stands across Germany. For this purpose, 792 trees were genotyped including 611 trees from 12 stands in Germany of unknown origin and 181 trees from four populations within the natural distribution area in North America. Our marker set included 12 potentially adaptive (expressed sequence tag-derived simple sequence repeat = EST SSR) and 8 putatively selectively neutral nuclear microsatellite (nSSR) markers. Our results showed that German stands retain comparatively high levels of genetic variation at both EST-SSRs and nSSRs, but are more similar to each other than to North American populations. These findings are in agreement with earlier chloroplast DNA analyses which suggested that German populations originated from a limited geographic area in North America. The comparison between potentially adaptive and neutral microsatellite markers did not reveal differences in the analyzed diversity and differentiation measures for most markers. However, locus FIR013 was identified as a potential outlier locus. Due to the absence of signatures of selection in German stands, we suggest that introduced populations were established with material from provenances that were adapted to environmental conditions similar to those in Germany. However, we analyzed only a limited number of loci which are unlikely to be representative of adaptive genetic differences among German stands. Our results suggest that the apparent introduction from a limited geographic range in North America may go along with a reduced adaptive potential. Numéro de notice : A2020-345 Thématique : FORET Nature : Article DOI : 10.1007/s10342-019-01256-5 date de publication en ligne : 18/01/2020 En ligne : https://doi.org/10.1007/s10342-019-01256-5 Format de la ressource électronique : url article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=95225 [article]

Clinal variation along precipitation gradients in Patagonian temperate forests: unravelling demographic and selection signatures in three Nothofagus spp. / Carolina Soliani in Annals of Forest Science [en ligne], Vol 77 n° 1 (March 2020)  

Public [article]  inAnnals of Forest Science [en ligne] > Vol 77 n° 1 (March 2020) . - 17 p. Titre : Clinal variation along precipitation gradients in Patagonian temperate forests: unravelling demographic and selection signatures in three Nothofagus spp. Type de document : Article/Communication Auteurs : Carolina Soliani, Auteur ; Maria Marta Azpilicueta, Auteur ; Maria Veronica Arana, Auteur ; Paula Marchelli, Auteur Année de publication : 2020 Article en page(s) : 17 p. Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Termes descripteurs IGN] analyse diachronique [Termes descripteurs IGN] forêt tempérée [Termes descripteurs IGN] génétique forestière [Termes descripteurs IGN] nothofagus (genre) [Termes descripteurs IGN] nothofagus pumilio [Termes descripteurs IGN] Patagonie [Termes descripteurs IGN] Pléistocène [Termes descripteurs IGN] précipitation [Termes descripteurs IGN] prévision [Termes descripteurs IGN] sécheresse [Termes descripteurs IGN] stress hydrique [Vedettes matières IGN] Végétation et changement climatique Résumé : (auteur) Key message: Past demographic changes and current selection pressures determine the genetic variation displayed by Nothofagus species along rainfall gradients. Based on the diversity trends observed at candidate genes associated to drought stress, we inferred a differential species’ adaptive potential. Context: Clinal genetic variation in natural populations could reflect either recent demographic history or the evolution of adapted genotypes along heterogeneous environments. Aims: We describe genetic variation patterns in three Nothofagus species of South American temperate forests, growing along steep rainfall gradients. Our hypothesis is that the selection pressure along this gradient reinforces the genetic structure previously shaped by Pleistocene climate oscillations. Methods: We screened variation along gradients at putative adaptive markers: candidate genes involved in response to drought, and EST-SSRs linked to drought stress genes. Genomic SSRs (gSSRs) were used to decouple the incidence of demographic events in the genetic structure. Results: Genetic diversity at SSRs agreed with the putative location of cryptic Pleistocene refugia in Nothofagus. In addition, each species showed different trends for nucleotide diversity at candidate genes. Unbiased heterozygosity significantly correlated with precipitation at EST-SSRs in Nothofagus nervosa. We found evidences of balancing selection and several SNPs departed from neutral expectations. Conclusions: Nothofagus genetic variability shows a strong imprint of demographic changes that reveals refugia location for the species during Pleistocene. This variability is modelled by environmental conditions across natural gradients, which impose selection pressure at genome regions related to stress response, providing clues about inter-specific differences in adaptive potential to water deficit. Numéro de notice : A2020-032 Thématique : FORET Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1007/s13595-019-0908-x date de publication en ligne : 10/01/2020 En ligne : https://doi.org/10.1007/s13595-019-0908-x Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=94489 [article]

A discriminative tensor representation model for feature extraction and classification of multispectral LiDAR data / Qingwang Wang in IEEE Transactions on geoscience and remote sensing, vol 58 n° 3 (March 2020)  

Public [article]  inIEEE Transactions on geoscience and remote sensing > vol 58 n° 3 (March 2020) . - pp 1568 -1586 Titre : A discriminative tensor representation model for feature extraction and classification of multispectral LiDAR data Type de document : Article/Communication Auteurs : Qingwang Wang, Auteur ; Yanfeng Gu, Auteur Année de publication : 2020 Article en page(s) : pp 1568 -1586 Note générale : Bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Lasergrammétrie [Termes descripteurs IGN] Amérique du nord [Termes descripteurs IGN] analyse discriminante [Termes descripteurs IGN] calcul tensoriel [Termes descripteurs IGN] carte d'occupation du sol [Termes descripteurs IGN] classification multibande [Termes descripteurs IGN] classification par séparateurs à vaste marge [Termes descripteurs IGN] données lidar [Termes descripteurs IGN] données localisées 3D [Termes descripteurs IGN] état de l'art [Termes descripteurs IGN] extraction de traits caractéristiques [Termes descripteurs IGN] image multibande [Termes descripteurs IGN] modèle géométrique [Termes descripteurs IGN] semis de points [Termes descripteurs IGN] tenseur [Termes descripteurs IGN] vectorisation [Termes descripteurs IGN] voisinage (topologie) Résumé : (Auteur) Multispectral light detection and ranging (MS-LiDAR) systems open the door to the possibility in the 3-D land cover classification at a finer scale using only point cloud data. This article proposes a model based on the tensor representation for multispectral point cloud classification. The proposed method combines the 3-D local spatial structure of each multispectral point by characterizing the point with a second-order tensor. The first mode of the tensor indicates the spatial location and spectral information of each point (i.e., the row of the second-order tensor) and the second mode denotes the neighborhood geometric and spectral structures (i.e., the column of the second-order tensor). Then we develop a novel tensor manifold discriminant embedding (TMDE) algorithm to extract the geometric–spectral features for multispectral point clouds classification. TMDE solves the mapping matrices of each mode by preserving the intraclass samples’ distribution further making it more compact and maximizing the distance of different classes. Finally, the support vector machine classifier with the extracted features as input is used to implement the classification of multispectral point clouds. Experiments are conducted on two real multispectral point cloud data sets. The experimental results demonstrate that the proposed method can achieve significant improvements in classification accuracies in comparison with several state-of-the-art algorithms. Numéro de notice : A2020-086 Thématique : IMAGERIE Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1109/TGRS.2019.2947081 date de publication en ligne : 30/10/2019 En ligne : https://doi.org/10.1109/TGRS.2019.2947081 Format de la ressource électronique : URL Article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=94660 [article]

Mapping precipitable water vapor time series from Sentinel-1 interferometric SAR / Pedro Mateus in IEEE Transactions on geoscience and remote sensing, vol 58 n° 2 (February 2020)  

Public [article]  inIEEE Transactions on geoscience and remote sensing > vol 58 n° 2 (February 2020) . - pp 1373 - 1379 Titre : Mapping precipitable water vapor time series from Sentinel-1 interferometric SAR Type de document : Article/Communication Auteurs : Pedro Mateus, Auteur ; João Catalão, Auteur ; Giovanni Nico, Auteur ; Pedro Benevides, Auteur Année de publication : 2020 Article en page(s) : pp 1373 - 1379 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Traitement d'image radar et applications [Termes descripteurs IGN] Appalaches [Termes descripteurs IGN] cartographie [Termes descripteurs IGN] données GNSS [Termes descripteurs IGN] image Sentinel-SAR [Termes descripteurs IGN] interferométrie différentielle [Termes descripteurs IGN] itération [Termes descripteurs IGN] méthode des moindres carrés [Termes descripteurs IGN] modèle atmosphérique [Termes descripteurs IGN] optimisation (mathématiques) [Termes descripteurs IGN] phase GNSS [Termes descripteurs IGN] prévision météorologique [Termes descripteurs IGN] série temporelle [Termes descripteurs IGN] vapeur d'eau Résumé : (auteur) In this article, a methodology to retrieve the precipitable water vapor (PWV) from a differential interferometric time series is presented. We used external data provided by atmospheric weather models (e.g., ERA-Interim reanalysis) to constrain the initial state and by Global Navigation Satellite System (GNSS) to phase ambiguities elimination introduced by phase unwrapping algorithm. An iterative least-square is then used to solve the optimization problem. We applied the presented methodology to two time series of differential PWV maps estimated from synthetic aperture radar (SAR) images acquired by the Sentinel-1A, over the southwest part of the Appalachian Mountains (USA). The results were validated using an independent GNSS data set and also compared with atmospheric weather prediction data. The GNSS PWV observations show a strong correlation with the estimated PWV maps with a root-mean-square error less than 1 mm. These results are very encouraging, particularly for the meteorology community, providing crucial information to assimilate into numerical weather models and potentially improve the forecasts. Numéro de notice : A2020-098 Thématique : IMAGERIE Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1109/TGRS.2019.2946077 date de publication en ligne : 28/10/2019 En ligne : https://doi.org/10.1109/TGRS.2019.2946077 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=94672 [article]

Coastal sea level and related fields from existing observing systems / Marta Marcos in Surveys in Geophysics, vol 40 n° 6 (November 2019)  

Public [article]  inSurveys in Geophysics > vol 40 n° 6 (November 2019) . - pp 1293 - 1317 Titre : Coastal sea level and related fields from existing observing systems Type de document : Article/Communication Auteurs : Marta Marcos, Auteur ; Guy Wöppelmann, Auteur ; Andrew Matthews, Auteur ; Rui M. Ponte, Auteur ; Florence Birol, Auteur ; Fabrice Ardhuin, Auteur ; Giovanni Coco, Auteur ; Alvaro Santamaria Gomez, Auteur ; Valérie Ballu, Auteur ; Laurent Testut, Auteur ; Don Chambers, Auteur ; Justin E. Stopa, Auteur Année de publication : 2019 Article en page(s) : pp 1293 - 1317 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Termes descripteurs IGN] Amérique du nord [Termes descripteurs IGN] données marégraphiques [Termes descripteurs IGN] Europe (géographie politique) [Termes descripteurs IGN] littoral [Termes descripteurs IGN] niveau de la mer Résumé : (auteur) We review the status of current sea-level observing systems with a focus on the coastal zone. Tide gauges are the major source of coastal sea-level observations monitoring most of the world coastlines, although with limited extent in Africa and part of South America. The longest tide gauge records, however, are unevenly distributed and mostly concentrated along the European and North American coasts. Tide gauges measure relative sea level but the monitoring of vertical land motion through high-precision GNSS, despite being essential to disentangle land and ocean contributions in tide gauge records, is only available in a limited number of stations. (25% of tide gauges have a GNSS station at less than 10 km.) Other data sources are new in situ observing systems fostered by recent progress in GNSS data processing (e.g., GPS reflectometry, GNSS-towed platforms) and coastal altimetry currently measuring sea level as close as 5 km from the coastline. Understanding observed coastal sea level also requires information on various contributing processes, and we provide an overview of some other relevant observing systems, including those on (offshore and coastal) wind waves and water density and mass changes. Numéro de notice : A2019-278 Thématique : POSITIONNEMENT Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1007/s10712-019-09513-3 date de publication en ligne : 05/02/2019 En ligne : https://doi.org/10.1007/s10712-019-09513-3 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=95411 [article]

Deep learning for multi-modal classification of cloud, shadow and land cover scenes in PlanetScope and Sentinel-2 imagery / Yuri Shendryk in ISPRS Journal of photogrammetry and remote sensing, vol 157 (November 2019)  

Permalink

Un été brûlant sous l’oeil des satellites / Laurent Polidori in Géomètre, n° 2173 (octobre 2019)

Permalink

Calibration of the normalized radar cross section for sentinel-1 wave mode / Huimin Li in IEEE Transactions on geoscience and remote sensing, vol 57 n° 3 (March 2019)  

Permalink

Effect of microsite quality and species composition on tree growth: A semi-empirical modeling approach / Carolina Mayoral in Forest ecology and management, vol 432 (15 January 2019)  

Permalink

Evaluating SAR-optical sensor fusion for aboveground biomass estimation in a Brazilian tropical forest / Aline Bernarda Debastiani in Annals of forest research, vol 62 n° 1 (January - June 2019)  

Permalink

Évaluation de la dégradation des forêts primaires par télédétection dans un espace de front pionnier consolidé d’Amazonie orientale (Paragominas) / Ali Fadhil Hasan (2019)  

Permalink

Exploring multiplexing tools for co-visualization in crisis units / Christelle Pierkot (2019)    

Permalink

A spatiotemporal calculus for reasoning about land-use trajectories / Adeline Marinho Maciel in International journal of geographical information science IJGIS, Vol 33 n° 1-2 (January - February 2019)  

Permalink

A vélo au travers des Andes, pour OpenStreetMap / Anonyme in Géomatique expert, n° 126 (janvier - février 2019)

Permalink

Monitoring climate sensitivity shifts in tree-rings of Eastern Boreal North America using model-data comparison : Shifts in tree growth sensivity to climate / Clémentine Ols in Ecosystems, vol 21 n° 5 (August 2018)  

Permalink