Centre dedocumentation
scientifique

Clinal variation along precipitation gradients in Patagonian temperate forests: unravelling demographic and selection signatures in three Nothofagus spp. / Carolina Soliani in Annals of Forest Science [en ligne], Vol 77 n° 1 (mars 2020)  

Public [article]  inAnnals of Forest Science [en ligne] > Vol 77 n° 1 (mars 2020) . - 17 p. Titre : Clinal variation along precipitation gradients in Patagonian temperate forests: unravelling demographic and selection signatures in three Nothofagus spp. Type de document : Article/Communication Auteurs : Carolina Soliani, Auteur ; Maria Marta Azpilicueta, Auteur ; Maria Veronica Arana, Auteur ; Paula Marchelli, Auteur Année de publication : 2020 Article en page(s) : 17 p. Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Termes descripteurs IGN] analyse diachronique [Termes descripteurs IGN] forêt tempérée [Termes descripteurs IGN] génétique forestière [Termes descripteurs IGN] nothofagus (genre) [Termes descripteurs IGN] nothofagus pumilio [Termes descripteurs IGN] Patagonie [Termes descripteurs IGN] Pléistocène [Termes descripteurs IGN] précipitation [Termes descripteurs IGN] prévision [Termes descripteurs IGN] sécheresse [Termes descripteurs IGN] stress hydrique [Vedettes matières IGN] Végétation et changement climatique Résumé : (auteur) Key message: Past demographic changes and current selection pressures determine the genetic variation displayed by Nothofagus species along rainfall gradients. Based on the diversity trends observed at candidate genes associated to drought stress, we inferred a differential species’ adaptive potential. Context: Clinal genetic variation in natural populations could reflect either recent demographic history or the evolution of adapted genotypes along heterogeneous environments. Aims: We describe genetic variation patterns in three Nothofagus species of South American temperate forests, growing along steep rainfall gradients. Our hypothesis is that the selection pressure along this gradient reinforces the genetic structure previously shaped by Pleistocene climate oscillations. Methods: We screened variation along gradients at putative adaptive markers: candidate genes involved in response to drought, and EST-SSRs linked to drought stress genes. Genomic SSRs (gSSRs) were used to decouple the incidence of demographic events in the genetic structure. Results: Genetic diversity at SSRs agreed with the putative location of cryptic Pleistocene refugia in Nothofagus. In addition, each species showed different trends for nucleotide diversity at candidate genes. Unbiased heterozygosity significantly correlated with precipitation at EST-SSRs in Nothofagus nervosa. We found evidences of balancing selection and several SNPs departed from neutral expectations. Conclusions: Nothofagus genetic variability shows a strong imprint of demographic changes that reveals refugia location for the species during Pleistocene. This variability is modelled by environmental conditions across natural gradients, which impose selection pressure at genome regions related to stress response, providing clues about inter-specific differences in adaptive potential to water deficit. Numéro de notice : A2020-032 Thématique : FORET Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1007/s13595-019-0908-x date de publication en ligne : 10/01/2020 En ligne : https://doi.org/10.1007/s13595-019-0908-x Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=94489 [article]

Effects of Quercus rubra L. on soil properties and humus forms in 50-year-old and 80-year-old forest stands of Lombardy plain / Chiara Ferré in Annals of Forest Science [en ligne], Vol 77 n° 1 (mars 2020)  

Public [article]  inAnnals of Forest Science [en ligne] > Vol 77 n° 1 (mars 2020) . - 19 p. Titre : Effects of Quercus rubra L. on soil properties and humus forms in 50-year-old and 80-year-old forest stands of Lombardy plain Type de document : Article/Communication Auteurs : Chiara Ferré, Auteur ; Roberto Comolli, Auteur Année de publication : 2020 Article en page(s) : 19 p. Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Termes descripteurs IGN] boisement artificiel [Termes descripteurs IGN] carbone [Termes descripteurs IGN] conversion forestière [Termes descripteurs IGN] humus [Termes descripteurs IGN] Lombardie [Termes descripteurs IGN] peuplement forestier [Termes descripteurs IGN] peuplement mélangé [Termes descripteurs IGN] quercus (genre) [Termes descripteurs IGN] quercus rubra [Vedettes matières IGN] Ecologie forestière Résumé : (auteur) Key message: Besides the well-known effects on the native plant community, red oak may also impact the soil; the effects of afforestation with red oak involve both organic layers and mineral soil, resulting in changes in organic carbon quantity and quality and in soil acidification. Context: Many alien species have become widespread in Europe; among these, red oak is a common invader of temperate forests. Aims: The effects of substitution of natural mixed forest by red oak forest on humus forms and soil properties were investigated in two paired plots: a 50-year-old (Bosco Vacaressino) and 80-year-old (Bosco Ginestre) forest stand. Methods: Soil sampling was performed from 3 layers at 40 and 49 points in Bosco Vacaressino and Bosco Ginestre respectively to determine humus forms, soil pH, organic carbon stock, carbon-nitrogen ratio (C:N), available phosphorus, and texture. Results: Red oak resulted in a shift from Mull to Moder humus forms; soil acidification, higher C:N ratio, and soil organic carbon stock were observed compared with mixed forests. Conclusion: The major changes were reflected in a change toward less active humus forms; the effects of vegetation conversions were also visible in mineral layers; many of the modifications were more evident with increasing stand age. Numéro de notice : A2020-033 Thématique : FORET Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1007/s13595-019-0893-0 date de publication en ligne : 10/01/2020 En ligne : https://doi.org/10.1007/s13595-019-0893-0 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=94490 [article]

Warming effects on morphological and physiological performances of four subtropical montane tree species Authors Authors and affiliations / Yiyong Li in Annals of Forest Science [en ligne], Vol 77 n° 1 (mars 2020)  

Public [article]  inAnnals of Forest Science [en ligne] > Vol 77 n° 1 (mars 2020) . - 11 p. Titre : Warming effects on morphological and physiological performances of four subtropical montane tree species Authors Authors and affiliations Type de document : Article/Communication Auteurs : Yiyong Li, Auteur ; Yue Xu, Auteur ; Ting Wu, Auteur ; et al., Auteur Année de publication : 2020 Article en page(s) : 11 p. Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Termes descripteurs IGN] changement climatique [Termes descripteurs IGN] croissance végétale [Termes descripteurs IGN] diagnostic foliaire [Termes descripteurs IGN] effet thermique [Termes descripteurs IGN] forêt tropicale [Termes descripteurs IGN] hauteur des arbres [Termes descripteurs IGN] montagne [Termes descripteurs IGN] morphologie [Termes descripteurs IGN] photosynthèse [Termes descripteurs IGN] stress hydrique [Vedettes matières IGN] Végétation et changement climatique Résumé : (auteur) Key message: In a downward transplantation experiment, warming stimulated growth and photosynthesis of Schima superba Gardn. et Champ., Syzygium rehderianum Merr. et Perry and Itea chinensis Hook. et Arn. via increased stomatal conductance. Warming had no effect on growth of Machilus breviflora (Benth.) Hemsl., indicating species-specific differences in response to warming. Context: Climate change has been shown to shift species composition and community structure in subtropical forests. Thus, understanding the species-specific responses of growth and physiological processes to warming is essential. Aims: To investigate how climate warming affects growth, morphological and physiological performance of co-occurring tree species when they are growing at different altitudes. Methods: Soils and 1-year-old seedlings of four subtropical co-occurring tree species (Schima superba Gardn. et Champ., Syzygium rehderianum Merr. et Perry, Itea chinensis Hook. et Arn. and Machilus breviflora (Benth.) Hemsl.) were transplanted to three altitudes (600 m, 300 m and 30 m a.s.l.), inducing an effective warming of 1.0 °C and 1.5 °C. Growth, morphological, and physiological performances of these seedlings were monitored. Results: When exposed to warmer conditions, aboveground growth of the four species except M. breviflora was strongly promoted, accompanied by increased light-saturated photosynthetic rate and stomatal conductance. Warming also significantly increased concentrations of non-structural carbohydrates in leaves of S. rehderianum and M. breviflora, stems of S. superba and S. rehderianum, and roots of I. chinensis. However, we did not detect any effect of warming on stomatal length and stomatal density. Conclusion: Our results provide evidence that climate warming could have species-specific impacts on co-occurring tree species, which might subsequently shift species composition and forest structure. Numéro de notice : A2020-037 Thématique : FORET Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1007/s13595-019-0910-3 date de publication en ligne : 10/01/2020 En ligne : https://doi.org/10.1007/s13595-019-0910-3 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=94491 [article]

Comparative usability of an augmented reality sandtable and 3D GIS for education / Antoni B. Moore in International journal of geographical information science IJGIS, vol 34 n° 2 (February 2020)  

Public [article]  inInternational journal of geographical information science IJGIS > vol 34 n° 2 (February 2020) . - pp 229 - 250 Titre : Comparative usability of an augmented reality sandtable and 3D GIS for education Type de document : Article/Communication Auteurs : Antoni B. Moore, Auteur ; Benjamin Daniel, Auteur ; greg Leonard, Auteur ; et al., Auteur Année de publication : 2020 Article en page(s) : pp 229 - 250 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Systèmes d'information géographique [Termes descripteurs IGN] enseignement supérieur [Termes descripteurs IGN] hydrologie [Termes descripteurs IGN] modèle numérique de terrain [Termes descripteurs IGN] modélisation 3D [Termes descripteurs IGN] Nouvelle-Zélande [Termes descripteurs IGN] réalité augmentée [Termes descripteurs IGN] réalité de terrain [Termes descripteurs IGN] réalité virtuelle [Termes descripteurs IGN] sable [Termes descripteurs IGN] test de performance Résumé : (auteur) Augmented Reality (AR) sandtables facilitate the shaping of sand to form a surface that is transformed into a digital terrain map which is projected back onto the sand. Although a mature technology, there are still few instances of sandtables being used in surface analysis. Fundamentally there has not been any reported formal assessment of how well sandtables perform in an educational context compared to other conventional learning environments. We compared learning outcomes from using an AR sandtable versus a conventional 3D GIS to convey key concepts in terrain and hydrological analyses via usability and knowledge testing. Overall results from students at a research-intensive New Zealand university reveal a faster task performance and more learning satisfaction when using the sandtable to undertake experimental tasks. Effectiveness and knowledge quiz results revealed no significant difference between the technologies though there was a trend for more accurate answers with 3D GIS tasks. Student learning wise, the sandtable integrated core concepts (especially morphometry) more effectively though both technologies were otherwise similar. We conclude that sandtables have high potential in geospatial teaching, fostering accessible and engaging means of introducing terrain and hydrological concepts, prior to undertaking a more accurate and precise surface analysis with 3D GIS. Numéro de notice : A2020-028 Thématique : GEOMATIQUE/INFORMATIQUE Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1080/13658816.2019.1656810 date de publication en ligne : 27/08/2019 En ligne : https://doi.org/10.1080/13658816.2019.1656810 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=94481 [article]

A convolutional neural network approach for counting and geolocating citrus-trees in UAV multispectral imagery / Lucas Prado Osco in ISPRS Journal of photogrammetry and remote sensing, vol 160 (February 2020)  

Public [article]  inISPRS Journal of photogrammetry and remote sensing > vol 160 (February 2020) . - pp 97 - 106 Titre : A convolutional neural network approach for counting and geolocating citrus-trees in UAV multispectral imagery Type de document : Article/Communication Auteurs : Lucas Prado Osco, Auteur ; Mauro Dos Santos de Arruda, Auteur ; José Marcato Junior, Auteur ; et al., Auteur Année de publication : 2020 Article en page(s) : pp 97 - 106 Note générale : Bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Traitement d'image optique [Termes descripteurs IGN] agrume [Termes descripteurs IGN] apprentissage profond [Termes descripteurs IGN] Brésil [Termes descripteurs IGN] carte de confiance [Termes descripteurs IGN] détection d'arbres [Termes descripteurs IGN] géolocalisation [Termes descripteurs IGN] image de drone [Termes descripteurs IGN] image multibande [Termes descripteurs IGN] inventaire de la végétation [Termes descripteurs IGN] réseau neuronal convolutif [Termes descripteurs IGN] verger Résumé : (Auteur) Visual inspection has been a common practice to determine the number of plants in orchards, which is a labor-intensive and time-consuming task. Deep learning algorithms have demonstrated great potential for counting plants on unmanned aerial vehicle (UAV)-borne sensor imagery. This paper presents a convolutional neural network (CNN) approach to address the challenge of estimating the number of citrus trees in highly dense orchards from UAV multispectral images. The method estimates a dense map with the confidence that a plant occurs in each pixel. A flight was conducted over an orchard of Valencia-orange trees planted in linear fashion, using a multispectral camera with four bands in green, red, red-edge and near-infrared. The approach was assessed considering the individual bands and their combinations. A total of 37,353 trees were adopted in point feature to evaluate the method. A variation of σ (0.5; 1.0 and 1.5) was used to generate different ground truth confidence maps. Different stages (T) were also used to refine the confidence map predicted. To evaluate the robustness of our method, we compared it with two state-of-the-art object detection CNN methods (Faster R-CNN and RetinaNet). The results show better performance with the combination of green, red and near-infrared bands, achieving a Mean Absolute Error (MAE), Mean Square Error (MSE), R2 and Normalized Root-Mean-Squared Error (NRMSE) of 2.28, 9.82, 0.96 and 0.05, respectively. This band combination, when adopting σ = 1 and a stage (T = 8), resulted in an R2, MAE, Precision, Recall and F1 of 0.97, 2.05, 0.95, 0.96 and 0.95, respectively. Our method outperforms significantly object detection methods for counting and geolocation. It was concluded that our CNN approach developed to estimate the number and geolocation of citrus trees in high-density orchards is satisfactory and is an effective strategy to replace the traditional visual inspection method to determine the number of plants in orchards trees. Numéro de notice : A2020-045 Thématique : FORET/IMAGERIE Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1016/j.isprsjprs.2019.12.010 date de publication en ligne : 18/12/2019 En ligne : https://doi.org/10.1016/j.isprsjprs.2019.12.010 Format de la ressource électronique : URL Article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=94525 [article]

Landslide displacement mapping based on ALOS-2/PALSAR-2 data using image correlation techniques and SAR interferometry: application to the Hell-Bourg landslide (Salazie Circle, La Réunion Island) / Daniel Raucoules in Geocarto international, vol 35 n° 2 ([01/02/2020])  

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Landslide susceptibility mapping using maximum entropy and support vector machine models along the highway corridor, Garhwal Himalaya / Vijendra Kumar Pandey in Geocarto international, vol 35 n° 2 ([01/02/2020])  

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Optimising drone flight planning for measuring horticultural tree crop structure / Yu-Hsuan Tu in ISPRS Journal of photogrammetry and remote sensing, vol 160 (February 2020)  

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Plant survival monitoring with UAVs and multispectral data in difficult access afforested areas / Maria Luz Gil-Docampo in Geocarto international, vol 35 n° 2 ([01/02/2020])  

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Real-time mapping of natural disasters using citizen update streams / Iranga Subasinghe in International journal of geographical information science IJGIS, vol 34 n° 2 (February 2020)  

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The "Incense Road" from Petra to Gaza: an analysis using GIS and Cost functions / Motti Zohar in International journal of geographical information science IJGIS, vol 34 n° 2 (February 2020)  

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A two-step approach for the correction of rolling shutter distortion in UAV photogrammetry / Yilin Zhou in ISPRS Journal of photogrammetry and remote sensing, vol 160 (February 2020)  

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Artificial neural network models by ALOS PALSAR data for aboveground stand carbon predictions of pure beech stands: a case study from northern of Turkey / Alkan Günlü in Geocarto international, Vol 35 n° 1 ([02/01/2020])  

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Modelling the orthoimage accuracy using DEM accuracy and off-nadir angle / Altan Yilmaz in Geocarto international, Vol 35 n° 1 ([02/01/2020])  

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3D iterative spatiotemporal filtering for classification of multitemporal satellite data sets / Hessah Albanwan in Photogrammetric Engineering & Remote Sensing, PERS, vol 86 n° 1 (January 2020)  

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