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Clinal variation along precipitation gradients in Patagonian temperate forests: unravelling demographic and selection signatures in three Nothofagus spp. / Carolina Soliani in Annals of Forest Science [en ligne], Vol 77 n° 1 (mars 2020)  

Public [article]  inAnnals of Forest Science [en ligne] > Vol 77 n° 1 (mars 2020) . - 17 p. Titre : Clinal variation along precipitation gradients in Patagonian temperate forests: unravelling demographic and selection signatures in three Nothofagus spp. Type de document : Article/Communication Auteurs : Carolina Soliani, Auteur ; Maria Marta Azpilicueta, Auteur ; Maria Veronica Arana, Auteur ; Paula Marchelli, Auteur Année de publication : 2020 Article en page(s) : 17 p. Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Termes descripteurs IGN] analyse diachronique [Termes descripteurs IGN] forêt tempérée [Termes descripteurs IGN] génétique forestière [Termes descripteurs IGN] nothofagus (genre) [Termes descripteurs IGN] nothofagus pumilio [Termes descripteurs IGN] Patagonie [Termes descripteurs IGN] Pléistocène [Termes descripteurs IGN] précipitation [Termes descripteurs IGN] prévision [Termes descripteurs IGN] sécheresse [Termes descripteurs IGN] stress hydrique [Vedettes matières IGN] Végétation et changement climatique Résumé : (auteur) Key message: Past demographic changes and current selection pressures determine the genetic variation displayed by Nothofagus species along rainfall gradients. Based on the diversity trends observed at candidate genes associated to drought stress, we inferred a differential species’ adaptive potential. Context: Clinal genetic variation in natural populations could reflect either recent demographic history or the evolution of adapted genotypes along heterogeneous environments. Aims: We describe genetic variation patterns in three Nothofagus species of South American temperate forests, growing along steep rainfall gradients. Our hypothesis is that the selection pressure along this gradient reinforces the genetic structure previously shaped by Pleistocene climate oscillations. Methods: We screened variation along gradients at putative adaptive markers: candidate genes involved in response to drought, and EST-SSRs linked to drought stress genes. Genomic SSRs (gSSRs) were used to decouple the incidence of demographic events in the genetic structure. Results: Genetic diversity at SSRs agreed with the putative location of cryptic Pleistocene refugia in Nothofagus. In addition, each species showed different trends for nucleotide diversity at candidate genes. Unbiased heterozygosity significantly correlated with precipitation at EST-SSRs in Nothofagus nervosa. We found evidences of balancing selection and several SNPs departed from neutral expectations. Conclusions: Nothofagus genetic variability shows a strong imprint of demographic changes that reveals refugia location for the species during Pleistocene. This variability is modelled by environmental conditions across natural gradients, which impose selection pressure at genome regions related to stress response, providing clues about inter-specific differences in adaptive potential to water deficit. Numéro de notice : A2020-032 Thématique : FORET Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1007/s13595-019-0908-x date de publication en ligne : 10/01/2020 En ligne : https://doi.org/10.1007/s13595-019-0908-x Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=94489 [article]

Warming effects on morphological and physiological performances of four subtropical montane tree species Authors Authors and affiliations / Yiyong Li in Annals of Forest Science [en ligne], Vol 77 n° 1 (mars 2020)  

Public [article]  inAnnals of Forest Science [en ligne] > Vol 77 n° 1 (mars 2020) . - 11 p. Titre : Warming effects on morphological and physiological performances of four subtropical montane tree species Authors Authors and affiliations Type de document : Article/Communication Auteurs : Yiyong Li, Auteur ; Yue Xu, Auteur ; Ting Wu, Auteur ; et al., Auteur Année de publication : 2020 Article en page(s) : 11 p. Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Termes descripteurs IGN] changement climatique [Termes descripteurs IGN] croissance végétale [Termes descripteurs IGN] diagnostic foliaire [Termes descripteurs IGN] effet thermique [Termes descripteurs IGN] forêt tropicale [Termes descripteurs IGN] hauteur des arbres [Termes descripteurs IGN] montagne [Termes descripteurs IGN] morphologie [Termes descripteurs IGN] photosynthèse [Termes descripteurs IGN] stress hydrique [Vedettes matières IGN] Végétation et changement climatique Résumé : (auteur) Key message: In a downward transplantation experiment, warming stimulated growth and photosynthesis of Schima superba Gardn. et Champ., Syzygium rehderianum Merr. et Perry and Itea chinensis Hook. et Arn. via increased stomatal conductance. Warming had no effect on growth of Machilus breviflora (Benth.) Hemsl., indicating species-specific differences in response to warming. Context: Climate change has been shown to shift species composition and community structure in subtropical forests. Thus, understanding the species-specific responses of growth and physiological processes to warming is essential. Aims: To investigate how climate warming affects growth, morphological and physiological performance of co-occurring tree species when they are growing at different altitudes. Methods: Soils and 1-year-old seedlings of four subtropical co-occurring tree species (Schima superba Gardn. et Champ., Syzygium rehderianum Merr. et Perry, Itea chinensis Hook. et Arn. and Machilus breviflora (Benth.) Hemsl.) were transplanted to three altitudes (600 m, 300 m and 30 m a.s.l.), inducing an effective warming of 1.0 °C and 1.5 °C. Growth, morphological, and physiological performances of these seedlings were monitored. Results: When exposed to warmer conditions, aboveground growth of the four species except M. breviflora was strongly promoted, accompanied by increased light-saturated photosynthetic rate and stomatal conductance. Warming also significantly increased concentrations of non-structural carbohydrates in leaves of S. rehderianum and M. breviflora, stems of S. superba and S. rehderianum, and roots of I. chinensis. However, we did not detect any effect of warming on stomatal length and stomatal density. Conclusion: Our results provide evidence that climate warming could have species-specific impacts on co-occurring tree species, which might subsequently shift species composition and forest structure. Numéro de notice : A2020-037 Thématique : FORET Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1007/s13595-019-0910-3 date de publication en ligne : 10/01/2020 En ligne : https://doi.org/10.1007/s13595-019-0910-3 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=94491 [article]

Close-range hyperspectral image analysis for the early detection of stress responses in individual plants in a high-throughput phenotyping platform / Mohd Shahrimie Mohd Asaari in ISPRS Journal of photogrammetry and remote sensing, vol 138 (April 2018)  

Public [article]  inISPRS Journal of photogrammetry and remote sensing > vol 138 (April 2018) . - pp 121 - 138 Titre : Close-range hyperspectral image analysis for the early detection of stress responses in individual plants in a high-throughput phenotyping platform Type de document : Article/Communication Auteurs : Mohd Shahrimie Mohd Asaari, Auteur ; Puneet Mishra ; Stien Mertens, Auteur ; Stijn Dhondt, Auteur ; et al., Auteur Année de publication : 2018 Article en page(s) : pp 121 - 138 Note générale : Bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Applications de télédétection [Termes descripteurs IGN] analyse spectrale [Termes descripteurs IGN] image hyperspectrale [Termes descripteurs IGN] maïs (céréale) [Termes descripteurs IGN] mesure de similitude [Termes descripteurs IGN] réflectance végétale [Termes descripteurs IGN] signature spectrale [Termes descripteurs IGN] similitude spectrale [Termes descripteurs IGN] stress hydrique Résumé : (Auteur) The potential of close-range hyperspectral imaging (HSI) as a tool for detecting early drought stress responses in plants grown in a high-throughput plant phenotyping platform (HTPPP) was explored. Reflectance spectra from leaves in close-range imaging are highly influenced by plant geometry and its specific alignment towards the imaging system. This induces high uninformative variability in the recorded signals, whereas the spectral signature informing on plant biological traits remains undisclosed. A linear reflectance model that describes the effect of the distance and orientation of each pixel of a plant with respect to the imaging system was applied. By solving this model for the linear coefficients, the spectra were corrected for the uninformative illumination effects. This approach, however, was constrained by the requirement of a reference spectrum, which was difficult to obtain. As an alternative, the standard normal variate (SNV) normalisation method was applied to reduce this uninformative variability. Once the envisioned illumination effects were eliminated, the remaining differences in plant spectra were assumed to be related to changes in plant traits. To distinguish the stress-related phenomena from regular growth dynamics, a spectral analysis procedure was developed based on clustering, a supervised band selection, and a direct calculation of a spectral similarity measure against a reference. To test the significance of the discrimination between healthy and stressed plants, a statistical test was conducted using a one-way analysis of variance (ANOVA) technique. The proposed analysis techniques was validated with HSI data of maize plants (Zea mays L.) acquired in a HTPPP for early detection of drought stress in maize plant. Results showed that the pre-processing of reflectance spectra with the SNV effectively reduces the variability due to the expected illumination effects. The proposed spectral analysis method on the normalized spectra successfully detected drought stress from the third day of drought induction, confirming the potential of HSI for drought stress detection studies and further supporting its adoption in HTPPP. Numéro de notice : A2018-122 Thématique : IMAGERIE Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1016/j.isprsjprs.2018.02.003 En ligne : https://doi.org/10.1016/j.isprsjprs.2018.02.003 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=89570 [article]

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Unsupervised domain adaptation for early detection of drought stress in hyperspectral images / P. Schmitter in ISPRS Journal of photogrammetry and remote sensing, vol 131 (September 2017)  

Public [article]  inISPRS Journal of photogrammetry and remote sensing > vol 131 (September 2017) . - pp 65 - 76 Titre : Unsupervised domain adaptation for early detection of drought stress in hyperspectral images Type de document : Article/Communication Auteurs : P. Schmitter, Auteur ; J. Steinrucken, Auteur ; C. Römer, Auteur ; et al., Auteur Année de publication : 2017 Article en page(s) : pp 65 - 76 Note générale : Bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Applications de télédétection [Termes descripteurs IGN] apprentissage automatique [Termes descripteurs IGN] détection automatique [Termes descripteurs IGN] image hyperspectrale [Termes descripteurs IGN] stress hydrique [Termes descripteurs IGN] végétation Résumé : (Auteur) Hyperspectral images can be used to uncover physiological processes in plants if interpreted properly. Machine Learning methods such as Support Vector Machines (SVM) and Random Forests have been applied to estimate development of biomass and detect and predict plant diseases and drought stress. One basic requirement of machine learning implies, that training and testing is done in the same domain and the same distribution. Different genotypes, environmental conditions, illumination and sensors violate this requirement in most practical circumstances. Here, we present an approach, which enables the detection of physiological processes by transferring the prior knowledge within an existing model into a related target domain, where no label information is available. We propose a two-step transformation of the target features, which enables a direct application of an existing model. The transformation is evaluated by an objective function including additional prior knowledge about classification and physiological processes in plants. We have applied the approach to three sets of hyperspectral images, which were acquired with different plant species in different environments observed with different sensors. It is shown, that a classification model, derived on one of the sets, delivers satisfying classification results on the transformed features of the other data sets. Furthermore, in all cases early non-invasive detection of drought stress was possible. Numéro de notice : A2017-536 Thématique : IMAGERIE Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1016/j.isprsjprs.2017.07.003 En ligne : https://doi.org/10.1016/j.isprsjprs.2017.07.003 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=86574 [article]

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Pit-mound microrelief in forest soils: Review of implications for water retention and hydrologic modelling / Martin Valtera in Forest ecology and management, vol 393 (1 June 2017)  

Public [article]  inForest ecology and management > vol 393 (1 June 2017) . - pp 40 - 51 Titre : Pit-mound microrelief in forest soils: Review of implications for water retention and hydrologic modelling Type de document : Article/Communication Auteurs : Martin Valtera, Auteur ; Randall J. Schaetzl, Auteur Année de publication : 2017 Article en page(s) : pp 40 - 51 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Termes descripteurs IGN] écosystème forestier [Termes descripteurs IGN] gestion forestière durable [Termes descripteurs IGN] microtopographie [Termes descripteurs IGN] ruissellement [Termes descripteurs IGN] santé des forêts [Termes descripteurs IGN] sol forestier [Termes descripteurs IGN] stress hydrique [Vedettes matières IGN] Végétation et changement climatique Résumé : (auteur) Forest ecosystems are known for their capacity to retain and redistribute water. Nevertheless, even in some forested watersheds, prolonged or intense rainfall events often exceed the retention threshold of the system, generating accelerated runoff. Surface microrelief is an important attribute of forest ecosystems that often act to mediate potential runoff. In most natural forests, the soil surface is typically unevenly broken with pit and mound microrelief, formed by both historical and recent tree uprooting events. In managed forests, however, tree uprooting is traditionally seen as undesirable. The systematic repression of this process may lead to gradual loss of microrelief. To date, little attention has been paid to the impacts of the pit-mound microrelief, or its absence, on forest hydrology. Restoration of naturally undulating microrelief in managed forests can help to accentuate water retention and mitigate runoff, while reducing drought stress and reinforcing forest productivity and resilience. This paper summarizes the literature and presents insights on the effects of tree uprooting on the microrelief of forest soils and forest hydrology, focusing on its consequences to water retention, tree water supply, and forest health. Furthermore, we explore the mechanisms and possible consequences of the long-term repression of these processes in intensively managed forests, with implications for forest management and further research. Numéro de notice : A2017-250 Thématique : FORET Nature : Article En ligne : https://doi.org/10.1016/j.foreco.2017.02.048 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=85233 [article]

Télédétection pour l'observation des surfaces continentales, ch. 3. Utilisation des diffusiomètres satellitaires pour le suivi des surfaces continentales / Pierre-Louis Frison (2017)

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Une strate herbacée monopoliste : quelle concurrence vis-à-vis de l’eau pour le peuplement adulte ? / Rémy Gobin in Rendez-vous techniques, n° 48-49 (été automne 2015) 

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Transpiration of four common understorey plant species according to drought intensity in temperate forests / Rémy Gobin in Annals of Forest Science [en ligne], vol 72 n° 8 (December 2015)  

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Stand density, tree social status and water stress influence allocation in height and diameter growth of Quercus petraea (Liebl.) / Raphaël Trouvé in Tree Physiology, vol 35 n° 10 (October 2015)    

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Caractérisation de la croissance des chênaies pédonculées atlantiques dépérissantes : effets des sécheresses et relation avec l’architecture des houppiers / François Lebourgeois in Revue forestière française [en ligne], vol 67 n° 4 (juillet 2015)

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Une infrastructure atlantique pour la recherche sur l'adaptation des forêts au changement climatique / Christophe Orazio in Forêt entreprise, n° 223 (juillet-août 2015)

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Individual-based approach as a useful tool to disentangle the relative importance of tree age, size and inter-tree competition in dendroclimatic studies / Vicente Rozas in iForest, biogeosciences and forestry, vol 8 n° 2 (April 2015)  

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Spectroscopic remote sensing of plant stress at leaf and canopy levels using the chlorophyll 680 nm absorption feature with continuum removal / I.D. Sanches in ISPRS Journal of photogrammetry and remote sensing, vol 97 (November 2014)

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Cartes de vigilance climatique : concept, usage, communication / Jean Lemaire in Forêt entreprise, n° 218 (septembre-octobre 2014)

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Lien entre le déficit hydrique climatique et le dépérissement du chêne pédonculé sur la façade atlantique / Jean Lemaire in Forêt entreprise, n° 218 (septembre-octobre 2014)

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