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Termes IGN > sciences naturelles > sciences de la vie > biologie > biométrie
biométrie
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biologie quantitative, biostatistique, statistique biologique. biologie, statistique. >> biomathématique. échantillonnage (statistique), statistique mathématique. >>Terme(s) spécifique(s) : analyse de survie (biométrie), génétique quantitative. Equiv. LCSH : Biometry. Domaine(s) : 510, 570. Voir aussi |
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Modeling size-density trajectories of even-aged ash (Fraxinus excelsior L.) stands in France. A baseline to assess the impact of Chalara ash dieback / Noël Le Goff in Annals of Forest Science, vol 78 n° 1 (March 2021)
[article]
Titre : Modeling size-density trajectories of even-aged ash (Fraxinus excelsior L.) stands in France. A baseline to assess the impact of Chalara ash dieback Type de document : Article/Communication Auteurs : Noël Le Goff, Auteur ; François Ningre, Auteur ; Jean-Marc Ottorini, Auteur Année de publication : 2021 Article en page(s) : n° 3 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Termes IGN] densité de la végétation
[Termes IGN] dépérissement
[Termes IGN] éclaircie (sylviculture)
[Termes IGN] foresterie
[Termes IGN] France (administrative)
[Termes IGN] Fraxinus excelsior
[Termes IGN] Fungi
[Termes IGN] maladie phytosanitaire
[Termes IGN] modèle de croissance végétale
[Termes IGN] mortalité
[Vedettes matières IGN] SylvicultureRésumé : (auteur) Key message: A piecewise polynomial function already used to represent the size-density trajectories of pure even-aged stands of beech, oak, and Douglas-fir proved its ability to represent the size-density trajectories of a new species, ash. The widespread ash dieback caused departures from the expected size-density trajectories. These abnormalities can be used to detect an extra level of mortality due to infection by Hymenoscyphus fraxineus in pure even-aged ash stands.
Context: The size-density trajectories allow quantifying more precisely the density of stands and can help the forest manager to decide of the opportunity of thinnings. This study helped to quantify extra mortality in pure even-aged stands by using the size-density trajectories established for stands evolving at maximum density.
Aims: This study was conducted to establish size-density trajectories of pure even-aged ash stands and compare them with those recently established for beech and oak in France, in particular concerning the onset of density-dependent (regular) mortality. The additional effect of ash dieback on mortality was also an issue.
Material and methods: We used permanent and semi-permanent unthinned ash plots installed in the north of France and where inventories of trees were performed at more or less regular intervals: measurements included tree status (dead or alive) and diameter or girth at breast height for all trees and total height for a sample of living trees. The size-density trajectories of plots describing the course of the number of living trees in relation with the mean stand girth, in logarithmic scales, were modeled with a piecewise polynomial function fitted with a mixed-effects model. A permanent sample of trees was also selected for ash dieback and extra mortality monitoring.
Results: The piecewise polynomial function already used proved its ability to represent the size-density trajectories of even-aged ash stands of various initial densities and fertility levels. As for beech and oak, the trajectories were modeled so that mortality onset occurred at a constant relative density. This level appeared to be much higher for ash (RDI = 0.58), revealing that ash survived with less growing space than beech and oak and appeared to be more efficient. Ash dieback caused an additional mortality in the experimental ash stands studied, and this excess of mortality appeared predictable on the basis of observed departures from the expected size-density trajectories.
Conclusion: A single parameter function family could be used to predict the size-density trajectories of even-aged ash stands, on the basis of the results obtained previously on oak and beech. Mortality onset and space requirements of ash could be compared with those of beech and oak and show that ash can survive at higher densities and is a more efficient species. Predicted size-density trajectories proved also useful to detect and quantify the excess of mortality due to H. fraxineus on ash. This approach could be extended to other diseases and species with predictable size-density trajectories.Numéro de notice : A2021-475 Affiliation des auteurs : non IGN Thématique : FORET Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1007/s13595-020-01005-4 Date de publication en ligne : 07/01/2021 En ligne : https://doi.org/10.1007/s13595-020-01005-4 Format de la ressource électronique : url article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=97095
in Annals of Forest Science > vol 78 n° 1 (March 2021) . - n° 3[article]The Salem simulator version 2.0: a tool for predicting the productivity of pure and mixed stands and simulating management operations / Raphaël Aussenac in Open Research Europe, vol 2021 ([01/03/2021])
[article]
Titre : The Salem simulator version 2.0: a tool for predicting the productivity of pure and mixed stands and simulating management operations Type de document : Article/Communication Auteurs : Raphaël Aussenac, Auteur ; Thomas Pérot, Auteur ; Mathieu Fortin, Auteur ; François de Coligny, Auteur ; Jean-Matthieu Monnet, Auteur ; Patrick Vallet, Auteur Année de publication : 2021 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Termes IGN] biomasse
[Termes IGN] composition d'un peuplement forestier
[Termes IGN] modèle de simulation
[Termes IGN] modélisation de la forêt
[Termes IGN] peuplement mélangé
[Termes IGN] peuplement pur
[Termes IGN] production primaire brute
[Termes IGN] productivité biologique
[Vedettes matières IGN] ForesterieRésumé : (auteur) A growing body of research suggests mixed-species stands are generally more productive than pure stands. However, this effect of mixture depends on species assemblages and environmental conditions and forest managers often lack tools to assess the potential benefit of shifting from pure to mixed stands. Here we present Salem, a simulator filling this gap. Salem predicts the dynamics of pure and mixed even-aged stands and makes it possible to simulate management operations. Its purpose is to be a decision support tool for forest managers and stakeholders as well as for policy makers. It is also designed to conduct virtual experiments and help answer research questions.
In Salem, we parameterised the growth in pure stand of 12 common tree species of Europe and we assessed the effect of mixture on species growth for 24 species pairs (made up of the 12 species mentioned above). Thus, Salem makes it possible to compare the productivity of 36 different pure and mixed stands depending on environmental conditions and user-defined management strategies. Salem is essentially based on the analysis of National Forest Inventory data. A major outcome of this analysis is that we found species mixture most often increases species growth, in particular at the poorest sites. Independently from the simulator, foresters and researchers can also consider using the species-specific models that constitute Salem: the growth models including or excluding mixture effect, the bark models, the diameter distribution models, the circumference-height relationship models, as well as the volume equations for the 12 parameterised species. Salem runs on Windows, Linux, or Mac. Its user-friendly graphical user interface makes it easy to use for non-modellers. Finally, it is distributed under a LGPL license and is therefore free and open source.Numéro de notice : A2021-507 Affiliation des auteurs : non IGN Thématique : FORET Nature : Article DOI : 10.12688/openreseurope.13671.1 Date de publication en ligne : 04/06/2021 En ligne : https://doi.org/10.12688/openreseurope.13671.1 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=98152
in Open Research Europe > vol 2021 [01/03/2021][article]An evaluation of multi-species empirical tree mortality algorithms for dynamic vegetation modelling / Timothy Thrippleton in Scientific reports, vol 11 (2021)
[article]
Titre : An evaluation of multi-species empirical tree mortality algorithms for dynamic vegetation modelling Type de document : Article/Communication Auteurs : Timothy Thrippleton, Auteur ; Lisa Hülsmann, Auteur ; Maxime Cailleret, Auteur ; Harald Bugmann, Auteur Année de publication : 2021 Article en page(s) : n° 19845 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Termes IGN] Abies alba
[Termes IGN] Betula pendula
[Termes IGN] dynamique de la végétation
[Termes IGN] Europe (géographie politique)
[Termes IGN] Fagus sylvatica
[Termes IGN] forêt ancienne
[Termes IGN] modélisation de la forêt
[Termes IGN] mortalité
[Termes IGN] Picea abies
[Termes IGN] Pinus sylvestris
[Termes IGN] Quercus sessiliflora
[Vedettes matières IGN] Végétation et changement climatiqueRésumé : (auteur) Tree mortality is key for projecting forest dynamics, but difficult to portray in dynamic vegetation models (DVMs). Empirical mortality algorithms (MAs) are often considered promising, but little is known about DVM robustness when employing MAs of various structures and origins for multiple species. We analysed empirical MAs for a suite of European tree species within a consistent DVM framework under present and future climates in two climatically different study areas in Switzerland and evaluated their performance using empirical data from old-growth forests across Europe. DVM projections under present climate showed substantial variations when using alternative empirical MAs for the same species. Under climate change, DVM projections showed partly contrasting mortality responses for the same species. These opposing patterns were associated with MA structures (i.e. explanatory variables) and occurred independent of species ecological characteristics. When comparing simulated forest structure with data from old-growth forests, we found frequent overestimations of basal area, which can lead to flawed projections of carbon sequestration and other ecosystem services. While using empirical MAs in DVMs may appear promising, our results emphasize the importance of selecting them cautiously. We therefore synthesize our insights into a guideline for the appropriate use of empirical MAs in DVM applications. Numéro de notice : A2021-964 Affiliation des auteurs : non IGN Thématique : FORET Nature : Article DOI : 10.1038/s41598-021-98880-2 Date de publication en ligne : 06/10/2021 En ligne : http://dx.doi.org/10.1038/s41598-021-98880-2 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=100136
in Scientific reports > vol 11 (2021) . - n° 19845[article]Identifying urban growth patterns through land-use/land-cover spatio-temporal metrics: Simulation and analysis / Marta Sapena Moll in International journal of geographical information science IJGIS, vol 35 n° 2 (February 2021)
[article]
Titre : Identifying urban growth patterns through land-use/land-cover spatio-temporal metrics: Simulation and analysis Type de document : Article/Communication Auteurs : Marta Sapena Moll, Auteur ; Luis Angel Ruiz, Auteur Année de publication : 2021 Article en page(s) : pp 375 - 396 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Analyse spatiale
[Termes IGN] analyse de groupement
[Termes IGN] analyse discriminante
[Termes IGN] analyse spatio-temporelle
[Termes IGN] carte d'occupation du sol
[Termes IGN] carte d'utilisation du sol
[Termes IGN] changement d'occupation du sol
[Termes IGN] croissance urbaine
[Termes IGN] distance euclidienne
[Termes IGN] modèle de croissance végétale
[Termes IGN] pondérationRésumé : (auteur) The spatial pattern of urban growth determines how the physical, socio-economic and environmental characteristics of urban areas change over time. Monitoring urban areas for early identification of spatial patterns facilitates assuring their sustainable growth. In this paper, we assess the use of spatio-temporal metrics from land-use/land-cover (LULC) maps to identify growth patterns. We applied LULC change models to simulate different scenarios of urban growth spatial patterns (i.e., expansion, compact, dispersed, road-based and leapfrog) on various baseline urban forms (i.e., monocentric, polycentric, sprawl and linear). Then, we computed the spatio-temporal metrics for the simulated scenarios, selected the most informative metrics by applying discriminant analysis and classified the growth patterns using clustering methods. Two metrics, Weighted mean expansion and Weighted Euclidean distance, which account for the densification, compactness and concentration of urban growth, were the most efficient for classifying the five growth patterns, despite the influence of the baseline urban form. These metrics have the potential to identify growth patterns for monitoring and evaluating the management of developing urban areas. Numéro de notice : A2021-040 Affiliation des auteurs : non IGN Thématique : GEOMATIQUE Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1080/13658816.2020.1817463 Date de publication en ligne : 08/09/2020 En ligne : https://doi.org/10.1080/13658816.2020.1817463 Format de la ressource électronique : url article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=96752
in International journal of geographical information science IJGIS > vol 35 n° 2 (February 2021) . - pp 375 - 396[article]Stand-scale climate change impacts on forests over large areas: transient responses and projection uncertainties / NIca Huber in Ecological Applications, vol 31 ([01/02/2021])
[article]
Titre : Stand-scale climate change impacts on forests over large areas: transient responses and projection uncertainties Type de document : Article/Communication Auteurs : NIca Huber, Auteur ; Harald Bugmann, Auteur Année de publication : 2021 Langues : Anglais (eng) Descripteur : [Termes IGN] analyse de sensibilité
[Termes IGN] changement climatique
[Termes IGN] croissance des arbres
[Termes IGN] forêt alpestre
[Termes IGN] incertitude des données
[Termes IGN] inventaire forestier étranger (données)
[Termes IGN] modèle de simulation
[Termes IGN] modèle dynamique
[Termes IGN] modélisation de la forêt
[Termes IGN] Suisse
[Vedettes matières IGN] Végétation et changement climatiqueRésumé : (auteur) The increasing impacts of climate change on forest ecosystems have triggered multiple model-based impact assessments for the future, which typically focused either on a small number of stand-scale case studies or on large scale analyses (i.e., continental to global). Therefore, substantial uncertainty remains regarding the local impacts over large areas (i.e., regions to countries), which is particularly problematic for forest management. We provide a comprehensive, high-resolution assessment of the climate change sensitivity of managed Swiss forests (~10,000 km2), which cover a wide range of environmental conditions. We used a dynamic vegetation model to project the development of typical forest stands derived from a stratification of the Third National Forest Inventory until the end of the 22nd century. Two types of simulations were conducted: one limited to using the extant local species, the other enabling immigration of potentially more climate-adapted species. Moreover, to assess the robustness of our projections, we quantified and decomposed the uncertainty in model projections resulting from the following sources: (1) climate change scenarios, (2) local site conditions, and (3) the dynamic vegetation model itself (i.e., represented by a set of model versions), an aspect hitherto rarely taken into account. The simulations showed substantial changes in basal area and species composition, with dissimilar sensitivity to climate change across and within elevation zones. Higher-elevation stands generally profited from increased temperature, but soil conditions strongly modulated this response. Low-elevation stands were increasingly subject to drought, with strong negative impacts on forest growth. Furthermore, current stand structure had a strong effect on the simulated response. The admixture of drought-tolerant species was found advisable across all elevations to mitigate future adverse climate-induced effects. The largest uncertainty in model projections was associated with climate change scenarios. Uncertainty induced by the model version was generally largest where overall simulated climate change impacts were small, thus corroborating the utility of the model for making projections into the future. Yet, the large influence of both site conditions and the model version on some of the projections indicates that uncertainty sources other than climate change scenarios need to be considered in climate change impact assessments. Numéro de notice : A2021-312 Affiliation des auteurs : non IGN Thématique : FORET Nature : Article DOI : 10.1002/eap.2313 Date de publication en ligne : 25/02/2021 En ligne : https://doi.org/10.1002/eap.2313 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=97811
in Ecological Applications > vol 31 [01/02/2021][article]Individual tree diameter growth modeling system for Dalat pine (Pinus dalatensis Ferré) of the upland mixed tropical forests / Bao Huy in Forest ecology and management, vol 480 (15 January 2021)Permalink30èmes Journées de la Recherche de l'IGN - ENSG dématérialisées du 25 au 28 mai 2021 / Journées Recherche de l'IGN 2021, 30èmes journées (25 - 28 mai 2021; France) (2021)PermalinkDéveloppement d'un modèle de macro-dynamique forestière pour simuler la dynamique des forêts françaises dans un contexte non-stationnaire / Timothée Audinot (2021)PermalinkTowards a systematic and continuous monitoring of climate change impacts on forest productivity in Europe [diaporama] / Clémentine Ols (2021)PermalinkTurgor – a limiting factor for radial growth in mature conifers along an elevational gradient / Richard L. Peters in New phytologist, vol 229 n° 1 (January 2021)PermalinkVariabilité environnementale et botanique de la densité du bois des espèces forestières et variabilité temporelle de la biomasse aérienne des forêts françaises : une analyse sur un échantillon systématique de l’inventaire forestier national / Baptiste Kerfriden (2021)PermalinkReply to Elmendorf and Ettinger: Photoperiod plays a dominant and irreplaceable role in triggering secondary growth resumption / Jian-Guo Huang in Proceedings of the National Academy of Sciences of the United States of America PNAS, vol 117 n° 52 (December 2020)PermalinkClimate sensitive single tree growth modeling using a hierarchical Bayes approach and integrated nested Laplace approximations (INLA) for a distributed lag model / Arne Nothdurft in Forest ecology and management, vol 478 ([15/12/2020])PermalinkBioclimatic modeling of potential vegetation types as an alternative to species distribution models for projecting plant species shifts under changing climates / Robert E. Keane in Forest ecology and management, vol 477 ([01/12/2020])PermalinkComparison of spatially and nonspatially explicit nonlinear mixed effects models for Norway spruce individual tree growth under single-tree selection / Simone Bianchi in Forests, vol 11 n° 12 (December 2020)Permalink