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Direct analysis in real-time (DART) time-of-flight mass spectrometry (TOFMS) of wood reveals distinct chemical signatures of two species of Afzelia / Peter Kitin in Annals of Forest Science [en ligne], vol 78 n° 2 (June 2021)  

Public [article]  inAnnals of Forest Science [en ligne] > vol 78 n° 2 (June 2021) . - Article 31 Titre : Direct analysis in real-time (DART) time-of-flight mass spectrometry (TOFMS) of wood reveals distinct chemical signatures of two species of Afzelia Type de document : Article/Communication Auteurs : Peter Kitin, Auteur ; Edgard Espinoza, Auteur ; Hans Beeckman, Auteur ; et al., Auteur Année de publication : 2021 Article en page(s) : Article 31 Note générale : Bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Traitement d'image [Termes IGN] abattage (sylviculture) [Termes IGN] Afzelia (genre) [Termes IGN] analyse discriminante [Termes IGN] apprentissage non-dirigé [Termes IGN] bois [Termes IGN] espèce végétale [Termes IGN] forêt tropicale [Termes IGN] identification de plantes [Termes IGN] signature spectrale [Termes IGN] spectrométrie [Termes IGN] taxinomie [Termes IGN] temps réel Résumé : (Auteur) Distinct chemical fingerprints of the wood of Afzelia pachyloba and A. bipindensis demonstrated an effective method for identifying these two commercially important species. Direct analysis in real-time (DART) time-of-flight mass spectrometry (TOFMS) allowed high-throughput examination of chemotypes with vast potential in taxonomic, ecological, and forensic research of wood. Context : Afzelia is a genus of valuable tropical timber trees. Accurate identification of wood is required for the prevention of illicit timber trade as well as for certification purposes in the forest and wood products industry. For many years, particular interest has been focused on attempts to distinguish the wood of A. bipindensis Harms from A. pachyloba Harms due to substantial differences in the commercial values of these two species. Aims : We investigated if wood chemical signatures and microscopy could identify the wood of A. bipindensis and A. pachyloba. Methods : We used two approaches, namely metabolome profiling by direct analysis in real-time (DART) time-of-flight mass spectrometry (TOFMS) and wood microstructure by light microscopy and SEM. In all, we analyzed samples from 89 trees of A. bipindensis, and A. pachyloba. Results : The two species could not be separated by the IAWA standard microscopic wood features. SEM analysis showed considerable variation in the morphology of vestured pits; however, this variation was not species-specific. In contrast, DART-TOFMS followed by unsupervised statistics (Discriminant Analysis of Principal Components) showed distinct metabolome signatures of the two species. Conclusion : DART-TOFMS provides a rapid method for wood identification that can be easily applied to small heartwood samples. Time- and cost-effective classification of wood chemotypes by DART-TOFMS can have potential applications in various research questions in forestry, wood science, tree-ecophysiology, and forensics. Numéro de notice : A2021-327 Affiliation des auteurs : non IGN Thématique : FORET/IMAGERIE Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1007/s13595-020-01024-1 date de publication en ligne : 31/03/2021 En ligne : https://doi.org/10.1007/s13595-020-01024-1 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=97488 [article]

Predicting tree species based on the geometry and density of aerial laser scanning point cloud of treetops / Nina Kranjec in Geodetski vestnik, vol 65 n° 2 (June - August 2021)  

Public [article]  inGeodetski vestnik > vol 65 n° 2 (June - August 2021) . - pp 234 - 259 Titre : Predicting tree species based on the geometry and density of aerial laser scanning point cloud of treetops Type de document : Article/Communication Auteurs : Nina Kranjec, Auteur ; Mihaela Triglav Cekada, Auteur ; Milan Kobal, Auteur Année de publication : 2021 Article en page(s) : pp 234 - 259 Note générale : bibliographie Langues : Anglais (eng) Slovène (slv) Descripteur : [Vedettes matières IGN] Lasergrammétrie [Termes IGN] Acer pseudoplatanus [Termes IGN] apprentissage automatique [Termes IGN] arbre de décision [Termes IGN] densité des points [Termes IGN] données lidar [Termes IGN] espèce végétale [Termes IGN] Fagus sylvatica [Termes IGN] feuillu [Termes IGN] figure géométrique [Termes IGN] Fraxinus excelsior [Termes IGN] houppier [Termes IGN] identification automatique [Termes IGN] inventaire forestier (techniques et méthodes) [Termes IGN] Larix decidua [Termes IGN] modèle de simulation [Termes IGN] modèle numérique de surface de la canopée [Termes IGN] Picea abies [Termes IGN] Pinophyta [Termes IGN] Pinus sylvestris [Termes IGN] semis de points [Termes IGN] Slovénie Résumé : (auteur) Based on the laser point clouds of 240 individual trees that were also identified in the field, we developed decision trees to distinguish deciduous and coniferous trees and individual tree species: Picea abies, Larix decidua, Pinus sylvestris, Fagus sylvatica, Acer pseudoplatanus, Fraxinus excelsior. The volume of the upper part of the tree crown (height of 3 m) and the average intensity of the laser reflections were used as explanatory variables. There were four aerial laser datasets: May 2012, September 2012, March 2013 and July 2015. We found that the combination of the volume and the average intensity of the first three laser datasets was the most reliable for predicting the selected tree species (60% model performance). A slightly poorer model performance was obtained if only the average intensity of the first three datasets was used (54% model performance). The worst model performance was given by the intensities (31 % model performance) or the volumes (21 % model performance) of dataset 4, which represents the national laser scanning of Slovenia (LSS). The best performing was the deciduous and coniferous separation, which achieved 75% and 95% success based on the test data (combination of volume and average intensity of the first three laser datasets). Using only the LSS intensities, deciduous and coniferous trees could be separated with 81% success. Numéro de notice : A2021-559 Affiliation des auteurs : non IGN Thématique : FORET/IMAGERIE Nature : Article DOI : 10.15292/geodetski-vestnik.2021.02.234-259 date de publication en ligne : 27/05/2021 En ligne : https://doi.org/10.15292/geodetski-vestnik.2021.02.234-259 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=98113 [article]

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Provisioning forest and conservation science with high-resolution maps of potential distribution of major European tree species under climate change / Debojyoti Chakraborty in Annals of Forest Science [en ligne], vol 78 n° 2 (June 2021)  

Public [article]  inAnnals of Forest Science [en ligne] > vol 78 n° 2 (June 2021) . - Article 26 Titre : Provisioning forest and conservation science with high-resolution maps of potential distribution of major European tree species under climate change Type de document : Article/Communication Auteurs : Debojyoti Chakraborty, Auteur ; Norbert Móricz, Auteur ; Ervin Rasztovits, Auteur ; et al., Auteur Année de publication : 2021 Article en page(s) : Article 26 Note générale : Bibliographie Langues : Anglais (eng) Descripteur : [Termes IGN] analyse de groupement [Termes IGN] carte forestière [Termes IGN] changement climatique [Termes IGN] conservation des ressources forestières [Termes IGN] espèce végétale [Termes IGN] Europe (géographie politique) [Termes IGN] Fagus sylvatica [Termes IGN] Larix decidua [Termes IGN] outil d'aide à la décision [Termes IGN] peuplement forestier [Termes IGN] Picea abies [Termes IGN] Pinus sylvestris [Termes IGN] Quercus pedunculata [Termes IGN] Quercus sessiliflora [Termes IGN] vulnérabilité [Vedettes matières IGN] Ecologie forestière Résumé : (Auteur) We developed a dataset of the potential distribution of seven ecologically and economically important tree species of Europe in terms of their climatic suitability with an ensemble approach while accounting for uncertainty due to model algorithms. The dataset was documented following the ODMAP protocol to ensure reproducibility. Our maps are input data in a decision support tool “SusSelect” which predicts the vulnerability of forest trees in climate change and recommends adapted planting material. Numéro de notice : A2021-329 Affiliation des auteurs : non IGN Thématique : BIODIVERSITE/FORET Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1007/s13595-021-01029-4 date de publication en ligne : 22/03/2021 En ligne : https://doi.org/10.1007/s13595-021-01029-4 Format de la ressource électronique : URL Article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=97490 [article]

CNN-based tree species classification using high resolution RGB image data from automated UAV observations / Sebastian Egli in Remote sensing, vol 12 n° 23 (December-2 2020)  

Public [article]  inRemote sensing > vol 12 n° 23 (December-2 2020) Titre : CNN-based tree species classification using high resolution RGB image data from automated UAV observations Type de document : Article/Communication Auteurs : Sebastian Egli, Auteur ; Martin Höpke, Auteur Année de publication : 2020 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Traitement d'image optique [Termes IGN] arbre (flore) [Termes IGN] classification par réseau neuronal convolutif [Termes IGN] détection d'arbres [Termes IGN] espèce végétale [Termes IGN] image captée par drone [Termes IGN] image RVB [Termes IGN] inventaire forestier (techniques et méthodes) [Termes IGN] phénologie Résumé : (auteur) Data on the distribution of tree species are often requested by forest managers, inventory agencies, foresters as well as private and municipal forest owners. However, the automated detection of tree species based on passive remote sensing data from aerial surveys is still not sufficiently developed to achieve reliable results independent of the phenological stage, time of day, season, tree vitality and prevailing atmospheric conditions. Here, we introduce a novel tree species classification approach based on high resolution RGB image data gathered during automated UAV flights that overcomes these insufficiencies. For the classification task, a computationally lightweight convolutional neural network (CNN) was designed. We show that with the chosen CNN model architecture, average classification accuracies of 92% can be reached independently of the illumination conditions and the phenological stages of four different tree species. We also show that a minimal ground sampling density of 1.6 cm/px is needed for the classification model to be able to make use of the spatial-structural information in the data. Finally, to demonstrate the applicability of the presented approach to derive spatially explicit tree species information, a gridded product is generated that yields an average classification accuracy of 88%. Numéro de notice : A2020-820 Affiliation des auteurs : non IGN Thématique : FORET/IMAGERIE Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.3390/rs12233892 date de publication en ligne : 27/11/2020 En ligne : https://doi.org/10.3390/rs12233892 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=97239 [article]

Bioclimatic modeling of potential vegetation types as an alternative to species distribution models for projecting plant species shifts under changing climates / Robert E. Keane in Forest ecology and management, vol 477 ([01/12/2020])  

Public [article]  inForest ecology and management > vol 477 [01/12/2020] . - 12 p. Titre : Bioclimatic modeling of potential vegetation types as an alternative to species distribution models for projecting plant species shifts under changing climates Type de document : Article/Communication Auteurs : Robert E. Keane, Auteur ; Lisa M. Holsinger, Auteur ; Rachel Loehman, Auteur Année de publication : 2020 Article en page(s) : 12 p. Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Termes IGN] carte de la végétation [Termes IGN] changement climatique [Termes IGN] classification par forêts aléatoires [Termes IGN] distribution spatiale [Termes IGN] écosystème [Termes IGN] espèce végétale [Termes IGN] habitat forestier [Termes IGN] modèle de simulation [Termes IGN] modèle dynamique [Termes IGN] modélisation de la forêt [Termes IGN] Montana (Etats-Unis) [Termes IGN] substitution [Vedettes matières IGN] Végétation et changement climatique Résumé : (auteur) Land managers need new tools for planning novel futures due to climate change. Species distribution modeling (SDM) has been used extensively to predict future distributions of species under different climates, but their map products are often too coarse for fine-scale operational use. In this study we developed a flexible, efficient, and robust method for mapping current and future distributions and abundances of vegetation species and communities at the fine spatial resolutions that are germane to land management. First, we mapped Potential Vegetation Types (PVTs) using conventional statistical modeling techniques (Random Forests) that used bioclimatic ecosystem process and climate variables as predictors. We obtained over 50% accuracy across 13 mapped PVTs for our study area. We then applied future climate projections as climate input to the Random Forest model to generate future PVT maps, and used field data describing the occurrence of tree and non-tree species in each PVT category to model and map species distribution for current and future climate. These maps were then compared to two previous SDM mapping efforts with over 80% agreement and equivalent accuracy. Because PVTs represent the biophysical potential of the landscape to support vegetation communities as opposed to the vegetation that currently exists, they can be readily linked to climate forecasts and correlated with other, climate-sensitive ecological processes significant in land management, such as fire regimes and site productivity. Numéro de notice : A2020-624 Affiliation des auteurs : non IGN Thématique : FORET Nature : Article DOI : 10.1016/j.foreco.2020.118498 date de publication en ligne : 18/08/2020 En ligne : https://doi.org/10.1016/j.foreco.2020.118498 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=96022 [article]

Mapping forest tree species in high resolution UAV-based RGB-imagery by means of convolutional neural networks / Felix Schiefer in ISPRS Journal of photogrammetry and remote sensing, vol 170 (December 2020)  

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See the forest and the trees: Effective machine and deep learning algorithms for wood filtering and tree species classification from terrestrial laser scanning / Zhouxin Xi in ISPRS Journal of photogrammetry and remote sensing, vol 168 (October 2020)  

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Tree species classification using structural features derived from terrestrial laser scanning / Louise Terryn in ISPRS Journal of photogrammetry and remote sensing, vol 168 (October 2020)  

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Detection of Xylella fastidiosa infection symptoms with airborne multispectral and thermal imagery: Assessing bandset reduction performance from hyperspectral analysis / T. Poblete in ISPRS Journal of photogrammetry and remote sensing, vol 162 (April 2020)  

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Mapping of forest tree distribution and estimation of forest biodiversity using Sentinel-2 imagery in the University Research Forest Taxiarchis in Chalkidiki, Greece / Maria Kampouri in Geocarto international, vol 34 n° 12 ([15/09/2019])  

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Partition idéalisée et régionalisée de la composition en espèces ligneuses des forêts françaises / Jean-Daniel Bontemps in Ecoscience, vol 26 n° 4 (2019)  

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Background mortality drivers of European tree species: climate change matters / Adrien Taccoen in Proceedings of the Royal society B : Biological sciences, Vol 286 n° 1900 (April 2019)  

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Modeling tree-growth : Assessing climate suitability of temperate forests growing in Moncayo Natural Park (Spain) / Edurne Martínez del Castillo in Forest ecology and management, vol 435 (1 March 2019)  

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Tree species classification in tropical forests using visible to shortwave infrared WorldView-3 images and texture analysis / Matheus Pinheiro Ferreira in ISPRS Journal of photogrammetry and remote sensing, vol 149 (March 2019)  

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Species mixing effects on forest productivity : A case study at stand-, species- and tree-level in the Netherlands / Huicui Lu in Forests, vol 9 n° 11 (November 2018)  

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