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Bioclimatic modeling of potential vegetation types as an alternative to species distribution models for projecting plant species shifts under changing climates / Robert E. Keane in Forest ecology and management, vol 477 ([01/12/2020])  

Public [article]  inForest ecology and management > vol 477 [01/12/2020] . - 12 p. Titre : Bioclimatic modeling of potential vegetation types as an alternative to species distribution models for projecting plant species shifts under changing climates Type de document : Article/Communication Auteurs : Robert E. Keane, Auteur ; Lisa M. Holsinger, Auteur ; Rachel Loehman, Auteur Année de publication : 2020 Article en page(s) : 12 p. Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Termes descripteurs IGN] carte de la végétation [Termes descripteurs IGN] changement climatique [Termes descripteurs IGN] classification par forêts aléatoires [Termes descripteurs IGN] distribution spatiale [Termes descripteurs IGN] écosystème [Termes descripteurs IGN] espèce végétale [Termes descripteurs IGN] habitat forestier [Termes descripteurs IGN] modèle de simulation [Termes descripteurs IGN] modèle dynamique [Termes descripteurs IGN] modélisation de la forêt [Termes descripteurs IGN] Montana (Etats-Unis) [Termes descripteurs IGN] substitution [Vedettes matières IGN] Végétation et changement climatique Résumé : (auteur) Land managers need new tools for planning novel futures due to climate change. Species distribution modeling (SDM) has been used extensively to predict future distributions of species under different climates, but their map products are often too coarse for fine-scale operational use. In this study we developed a flexible, efficient, and robust method for mapping current and future distributions and abundances of vegetation species and communities at the fine spatial resolutions that are germane to land management. First, we mapped Potential Vegetation Types (PVTs) using conventional statistical modeling techniques (Random Forests) that used bioclimatic ecosystem process and climate variables as predictors. We obtained over 50% accuracy across 13 mapped PVTs for our study area. We then applied future climate projections as climate input to the Random Forest model to generate future PVT maps, and used field data describing the occurrence of tree and non-tree species in each PVT category to model and map species distribution for current and future climate. These maps were then compared to two previous SDM mapping efforts with over 80% agreement and equivalent accuracy. Because PVTs represent the biophysical potential of the landscape to support vegetation communities as opposed to the vegetation that currently exists, they can be readily linked to climate forecasts and correlated with other, climate-sensitive ecological processes significant in land management, such as fire regimes and site productivity. Numéro de notice : A2020-624 Affiliation des auteurs : non IGN Thématique : FORET Nature : Article DOI : 10.1016/j.foreco.2020.118498 date de publication en ligne : 18/08/2020 En ligne : https://doi.org/10.1016/j.foreco.2020.118498 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=96022 [article]

See the forest and the trees: Effective machine and deep learning algorithms for wood filtering and tree species classification from terrestrial laser scanning / Zhouxin Xi in ISPRS Journal of photogrammetry and remote sensing, vol 168 (October 2020)  

Public [article]  inISPRS Journal of photogrammetry and remote sensing > vol 168 (October 2020) . - pp 1 - 16 Titre : See the forest and the trees: Effective machine and deep learning algorithms for wood filtering and tree species classification from terrestrial laser scanning Type de document : Article/Communication Auteurs : Zhouxin Xi, Auteur ; Christopher Hopkinson, Auteur ; Stewart B. Rood, Auteur ; Derek R. Peddle, Auteur Année de publication : 2020 Article en page(s) : pp 1 - 16 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Lasergrammétrie [Termes descripteurs IGN] analyse comparative [Termes descripteurs IGN] apprentissage automatique [Termes descripteurs IGN] apprentissage profond [Termes descripteurs IGN] classification [Termes descripteurs IGN] données lidar [Termes descripteurs IGN] données localisées 3D [Termes descripteurs IGN] espèce végétale [Termes descripteurs IGN] gestion forestière [Termes descripteurs IGN] semis de points [Termes descripteurs IGN] variation saisonnière Résumé : (auteur) Determining tree species composition in natural forests is essential for effective forest management. Species classification at the individual tree level requires fine-scale traits which can be derived through terrestrial laser scanning (TLS) point clouds. A generalizable species classification framework also needs to decouple seasonal foliage variation from deciduous species, for which wood filtering is applicable. Different machine learning and deep learning models are feasible for wood filtering and species classification. We investigated 13 machine learning and deep learning classifiers for 9 species, and 15 classifiers for filtering wood points from TLS plot scans. Each classifier was evaluated using the criteria of mean Intersection over Union accuracy (mIoU), training stability and time cost. On average, deep learning classifiers outperformed machine learning classifiers by 10% and 5% in terms of wood and species classification mIoU, respectively. PointNet++ provided the best species classifier, with the highest mIoU (0.906), stability, and moderate time cost. Among wood classifiers, UNet achieved the top mIoU (0.839) while ResNet-50 was recommended for rapid trial and error testing. Across the classifications, the factors of input resolution, attributes and features were also analyzed. Hot zones of species classification with PointNet++ were visualized to indicate how AI interpret species traits. Numéro de notice : A2020-533 Affiliation des auteurs : non IGN Thématique : FORET/IMAGERIE Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1016/j.isprsjprs.2020.08.001 date de publication en ligne : 10/08/2020 En ligne : https://doi.org/10.1016/j.isprsjprs.2020.08.001 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=95718 [article]

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Detection of Xylella fastidiosa infection symptoms with airborne multispectral and thermal imagery: Assessing bandset reduction performance from hyperspectral analysis / T. Poblete in ISPRS Journal of photogrammetry and remote sensing, vol 162 (April 2020)  

Public [article]  inISPRS Journal of photogrammetry and remote sensing > vol 162 (April 2020) . - pp 27 - 40 Titre : Detection of Xylella fastidiosa infection symptoms with airborne multispectral and thermal imagery: Assessing bandset reduction performance from hyperspectral analysis Type de document : Article/Communication Auteurs : T. Poblete, Auteur ; C. Camino, Auteur ; P.S.A. Beck, Auteur Année de publication : 2020 Article en page(s) : pp 27 - 40 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Applications de télédétection [Termes descripteurs IGN] chlorophylle [Termes descripteurs IGN] classification par séparateurs à vaste marge [Termes descripteurs IGN] espèce végétale [Termes descripteurs IGN] FLUORESCENCE [Termes descripteurs IGN] image hyperspectrale [Termes descripteurs IGN] image multibande [Termes descripteurs IGN] image satellite [Termes descripteurs IGN] image thermique [Termes descripteurs IGN] Italie [Termes descripteurs IGN] maladie bactérienne [Termes descripteurs IGN] maladie phytosanitaire [Termes descripteurs IGN] Olea europaea [Termes descripteurs IGN] stress hydrique [Termes descripteurs IGN] surveillance de la végétation [Termes descripteurs IGN] télédétection aérienne [Termes descripteurs IGN] traitement d'image Résumé : (auteur) Xylella fastidiosa (Xf) is a harmful plant pathogenic bacterium, able to infect over 500 plant species worldwide. Successful eradication and containment strategies for harmful pathogens require large-scale monitoring techniques for the detection of infected hosts, even when they do not display visual symptoms. Although a previous study using airborne hyperspectral and thermal imagery has shown promising results for the early detection of Xf-infected olive (Olea europaea) trees, further work is needed when adopting these techniques for large scale monitoring using multispectral cameras on board airborne platforms and satellites. We used hyperspectral and thermal imagery collected during a two-year airborne campaign in a Xf-infected area in southern Italy to assess the performance of spectrally constrained machine-learning algorithms for this task. The algorithms were used to assess multispectral bandsets, selected from the original hyperspectral imagery, that were compatible with large-scale monitoring from unmanned platforms and manned aircraft. In addition, the contribution of solar–induced chlorophyll fluorescence (SIF) and the temperature-based Crop Water Stress Index (CWSI) retrieved from hyperspectral and thermal imaging, respectively, were evaluated to quantify their relative importance in the algorithms used to detect Xf infection. The detection performance using support vector machine algorithms decreased from ∼80% (kappa, κ = 0.42) when using the original full hyperspectral dataset including SIF and CWSI to ∼74% (κ = 0.36) when the optimal set of six spectral bands most sensitive to Xf infection were used in addition to the CWSI thermal indicator. When neither SIF nor CWSI were used, the detection yielded less than 70% accuracy (decreasing κ to very low performance, 0.29), revealing that tree temperature was more important than chlorophyll fluorescence for the Xf detection. This work demonstrates that large-scale Xf monitoring can be supported using airborne platforms carrying multispectral and thermal cameras with a limited number of spectral bands (e.g., six to 12 bands with 10 nm bandwidths) as long as they are carefully selected by their sensitivity to the Xf symptoms. More precisely, the blue (bands between 400 and 450 nm to derive the NPQI index) and thermal (to derive CWSI from tree temperature) were the most critical spectral regions for their sensitivity to Xf symptoms in olive. Numéro de notice : A2020-120 Affiliation des auteurs : non IGN Thématique : IMAGERIE Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1016/j.isprsjprs.2020.02.010 date de publication en ligne : 18/02/2020 En ligne : https://doi.org/10.1016/j.isprsjprs.2020.02.010 Format de la ressource électronique : url article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=94745 [article]

Mapping of forest tree distribution and estimation of forest biodiversity using Sentinel-2 imagery in the University Research Forest Taxiarchis in Chalkidiki, Greece / Maria Kampouri in Geocarto international, vol 34 n° 12 ([15/09/2019])  

Public [article]  inGeocarto international > vol 34 n° 12 [15/09/2019] . - pp 1273 - 1285 Titre : Mapping of forest tree distribution and estimation of forest biodiversity using Sentinel-2 imagery in the University Research Forest Taxiarchis in Chalkidiki, Greece Type de document : Article/Communication Auteurs : Maria Kampouri, Auteur ; Polychronis Kolokoussis, Auteur ; Demetre Argialas, Auteur ; Vassilia Karathanassi, Auteur Année de publication : 2019 Article en page(s) : pp 1273 - 1285 Note générale : Bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Applications de télédétection [Termes descripteurs IGN] analyse d'image orientée objet [Termes descripteurs IGN] biomasse forestière [Termes descripteurs IGN] conservation des ressources forestières [Termes descripteurs IGN] écosystème forestier [Termes descripteurs IGN] espèce végétale [Termes descripteurs IGN] Grèce [Termes descripteurs IGN] image multibande [Termes descripteurs IGN] image multitemporelle [Termes descripteurs IGN] image Sentinel-MSI [Termes descripteurs IGN] indicateur de biodiversité [Termes descripteurs IGN] indice de diversité [Termes descripteurs IGN] modèle numérique de surface [Termes descripteurs IGN] réalité de terrain [Termes descripteurs IGN] segmentation d'image Résumé : (Auteur) The aim of this study is to investigate the potential of Sentinel-2 imagery for the identification and determination of forest patches of particular interest, with respect to ecosystem integrity and biodiversity and to produce a relevant biodiversity map, based on Simpson’s diversity index in Taxiarchis university research forest, Chalkidiki, North Greece. The research is based on OBIA being developed on to bi-temporal summer and winter Sentinel-2 imagery. Fuzzy rules, which are based on topographic factors, such as terrain elevation and slope for the distribution of each tree species, derived from expert knowledge and field observations, were used to improve the accuracy of tree species classification. Finally, Simpson’s diversity index for forest tree species, was calculated and mapped, constituting a relative indicator for biodiversity for forest ecosystem organisms (fungi, insects, birds, reptiles, mammals) and carrying implications for the identification of patches prone to disturbance or that should be prioritized for conservation. Numéro de notice : A2019-465 Affiliation des auteurs : non IGN Thématique : BIODIVERSITE/FORET/IMAGERIE Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1080/10106049.2018.1489424 date de publication en ligne : 12/09/2018 En ligne : https://doi.org/10.1080/10106049.2018.1489424 Format de la ressource électronique : URL Article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=93616 [article]

Partition idéalisée et régionalisée de la composition en espèces ligneuses des forêts françaises / Jean-Daniel Bontemps in Ecoscience, vol 26 n° 4 (2019)  

Public [article]  inEcoscience > vol 26 n° 4 (2019) . - pp 291 - 308 Titre : Partition idéalisée et régionalisée de la composition en espèces ligneuses des forêts françaises Type de document : Article/Communication Auteurs : Jean-Daniel Bontemps , Auteur ; Jean-Christophe Hervé , Auteur ; Anaïs Denardou, Auteur Année de publication : 2019 Projets : ARBRE / Article en page(s) : pp 291 - 308 Note générale : bibliographie This work was supported by the Agence Nationale de l’Environnement et de la Maîtrise de l’Energie (ADEME), by the Regional Council of Lorraine, and by the French National Research Agency (ANR) through Labex ARBRE project (ANR-11-LABX-0002-01). Langues : Anglais (eng) Descripteur : [Termes descripteurs IGN] biodiversité végétale [Termes descripteurs IGN] bois [Termes descripteurs IGN] espèce végétale [Termes descripteurs IGN] grande région écologique [Termes descripteurs IGN] inventaire forestier national (données France) [Termes descripteurs IGN] ressources forestières [Termes descripteurs IGN] surface forestière [Vedettes matières IGN] Inventaire forestier Résumé : (auteur) Forest tree species strongly influence forest dynamics and management. French forests have the greatest compositional diversity in Europe, which constrains the quantitative analysis of associated wood resources. A partition of French forests according to dominant tree species composition and stratified by biogeographical regions (GRECO) was developed in order to handle this diversity. The partition relies on forest composition as measured by the national forest inventory (2006–2015, > 65,000 plots). It builds on the J-shaped distribution of elementary composition abundance, identifies dominant compositions describing at least 50% of the GRECO's area, and groups minor compositions. An ecological assessment of this partition and its application to the analysis of the growing stock are developed. The partition describes 61.4% of the forest area (66% of the growing stock) according to 29 dominant compositions, demonstrating its efficiency. These compositions revealed the importance of broadleaved mixtures, and of neglected forest strata (pine species in Northern France). Growing stock density appeared lowest in broadleaved compositions (Mediterranean oaks), and highest in some coniferous compositions (silver fir/Norway spruce mixture in mountains). Partitioning highlights the role of ecological contexts and forest management on tree diversity. Numéro de notice : A2019-328 Affiliation des auteurs : LIF seul (2012-2019) Thématique : FORET Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1080/11956860.2019.1588511 date de publication en ligne : 14/04/2019 En ligne : https://doi.org/10.1080/11956860.2019.1588511 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=93331 [article]

Background mortality drivers of European tree species: climate change matters / Adrien Taccoen in Proceedings of the Royal society B : Biological sciences, Vol 286 n° 1900 (April 2019)  

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Modeling tree-growth : Assessing climate suitability of temperate forests growing in Moncayo Natural Park (Spain) / Edurne Martínez del Castillo in Forest ecology and management, vol 435 (1 March 2019)  

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Tree species classification in tropical forests using visible to shortwave infrared WorldView-3 images and texture analysis / Matheus Pinheiro Ferreira in ISPRS Journal of photogrammetry and remote sensing, vol 149 (March 2019)  

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Species mixing effects on forest productivity : A case study at stand-, species- and tree-level in the Netherlands / Huicui Lu in Forests, vol 9 n° 11 (November 2018)  

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Connecting infrared spectra with plant traits to identify species / Maria F. Buitrago in ISPRS Journal of photogrammetry and remote sensing, vol 139 (May 2018)  

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Estimating stand density, biomass and tree species from very high resolution stereo-imagery – towards an all-in-one sensor for forestry applications? / Fabian E. Fassnacht in Forestry, an international journal of forest research, vol 90 n° 5 (December 2017)  

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Remote sensing of species diversity using Landsat 8 spectral variables / Sabelo Madonsela in ISPRS Journal of photogrammetry and remote sensing, vol 133 (November 2017)  

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Tree species classification using within crown localization of waveform LiDAR attributes / Rosmarie Blomley in ISPRS Journal of photogrammetry and remote sensing, vol 133 (November 2017)  

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Northern conifer forest species classification using multispectral data acquired from an unmanned aerial vehicle / Steven E. Franklin in Photogrammetric Engineering & Remote Sensing, PERS, vol 83 n° 7 (July 2017)  

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Semantic segmentation of forest stands of pure species combining airborne lidar data and very high resolution multispectral imagery / Clément Dechesne in ISPRS Journal of photogrammetry and remote sensing, vol 126 (April 2017)  

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