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Drought in the forest breaks plant–fungi interactions / Andrzej Boczoń in European Journal of Forest Research, vol 140 n° 6 (December 2021)
[article]
Titre : Drought in the forest breaks plant–fungi interactions Type de document : Article/Communication Auteurs : Andrzej Boczoń, Auteur ; Dorota Hilszczańska, Auteur ; Marta Wrzosek, Auteur ; et al., Auteur Année de publication : 2021 Article en page(s) : pp 1301 - 1321 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Termes IGN] champignon mycorhizien
[Termes IGN] dépérissement
[Termes IGN] écosystème forestier
[Termes IGN] endophyte
[Termes IGN] Europe centrale
[Termes IGN] relations plante - sol
[Termes IGN] sécheresse
[Termes IGN] stress hydrique
[Termes IGN] teneur en eau de la végétation
[Vedettes matières IGN] Végétation et changement climatiqueRésumé : (auteur) Drought in the forest is not only a prolonged state of water shortage, but also an occasion where interactions between plants and fungi are affected. Water efficiency accelerates a range of pathologies in interactions between organisms, influencing the ecosystems and their interacting biological components. This study focuses on the role of mycorrhizal and endophyte fungi in alleviating the effects of soil water shortage, and on the impact of their altered activity during drought on the health of trees. The issues presented here show the fundamental role of the mycorrhizal mycelium and the mechanism of water transport to the plant in the course of other phenomena (withering, pathogenesis, endophytes biology) that occur in trees under influence of drought, with particular attention on managed coniferous stands. Conclusions resulting from published information on this topic emphasize the negative impact of soil moisture deficiency on the ectomycorrhizal fungi functioning and, in contrast, on the promotion of the growth of some endophytes, pathogens and hemi-parasitic mistletoes (Viscum spp.). Numéro de notice : A2021-836 Affiliation des auteurs : non IGN Thématique : FORET Nature : Article DOI : 10.1007/s10342-021-01409-5 Date de publication en ligne : 04/09/2021 En ligne : https://doi.org/10.1007/s10342-021-01409-5 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=99016
in European Journal of Forest Research > vol 140 n° 6 (December 2021) . - pp 1301 - 1321[article]Early detection of spruce vitality loss with hyperspectral data: Results of an experimental study in Bavaria, Germany / Kathrin Einzmann in Remote sensing of environment, vol 266 (December 2021)
[article]
Titre : Early detection of spruce vitality loss with hyperspectral data: Results of an experimental study in Bavaria, Germany Type de document : Article/Communication Auteurs : Kathrin Einzmann, Auteur ; Clement Atzberger, Auteur ; Nicole Pinnel, Auteur ; et al., Auteur Année de publication : 2021 Article en page(s) : n° 112676 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Applications de télédétection
[Termes IGN] Bavière (Allemagne)
[Termes IGN] changement climatique
[Termes IGN] classification par forêts d'arbres décisionnels
[Termes IGN] dépérissement
[Termes IGN] détection de changement
[Termes IGN] houppier
[Termes IGN] image hyperspectrale
[Termes IGN] indice de végétation
[Termes IGN] insecte nuisible
[Termes IGN] phénomène climatique extrême
[Termes IGN] Picea abies
[Termes IGN] réflectance spectrale
[Termes IGN] série temporelle
[Termes IGN] stress hydriqueRésumé : (auteur) Vitality loss of trees caused by extreme weather conditions, drought stress or insect infestations, are expected to increase with ongoing climate change. The detection of vitality loss at an early stage is thus of vital importance for forestry and forest management to minimize ecological and economical damage. Remote sensing instruments are able to detect changes over large areas down to the level of individual trees. The scope of our study is to investigate whether it is possible to detect stress-related spectral changes at an early stage using hyperspectral sensors. For this purpose, two Norway spruce (Picea abies) forest stands, both different in age and maintenance, were monitored in the field over two vegetation periods. In parallel, time series of airborne hyperspectral remote sensing data were acquired. For each stand 70 trees were artificially stressed (ring-barked) and 70 trees were used as control trees. The data collected in south-eastern Germany consists of measurements at multiple times and at different scales: (1) crown conditions were visually assessed in the field (2) needle reflectance spectra were acquired in the laboratory using a FieldSpec spectrometer, and (3) hyperspectral airborne data (HySpex) were flown at 0.5 m spatial resolution. We aimed for a simultaneous data acquisition at the three levels. This unique data set was investigated whether any feature can be discriminated to detect vitality loss in trees at an early stage. Several spectral transformations were applied to the needle and tree crown spectra, such as spectral derivatives, vegetation indices and angle indices. All features were examined for their separability (ring-barked vs. control trees) with the Random Forest (RF) classification algorithm. As result, the younger, well maintained forest stand only showed minor changes over the 2-year period, whereas changes in the older forest stand were observable both in the needle and in the hyperspectral tree crown spectra, respectively. These changes could even be detected before changes were visible by field observations. The tree spectral reactions to ring-barking were first noticeable 11 months after ring-barking and 6 weeks before they were visible by field inspection. The most discriminative features for separating the two groups were the reflectance spectra and the spectral derivatives, over the VIs or angle indices. The tree crown spectra of the two groups could be separated by the RF classifier with a 79% overall accuracy at the beginning of the second vegetation period and 1 month later with 92% overall accuracy with high kappa index. The results clearly demonstrate the great potential of hyperspectral remote sensing in detecting early vitality changes of stressed trees. Numéro de notice : A2021-921 Affiliation des auteurs : non IGN Thématique : FORET/IMAGERIE Nature : Article DOI : 10.1016/j.rse.2021.112676 Date de publication en ligne : 21/09/2021 En ligne : https://doi.org/10.1016/j.rse.2021.112676 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=99274
in Remote sensing of environment > vol 266 (December 2021) . - n° 112676[article]National scale mapping of larch plantations for Wales using the Sentinel-2 data archive / Suvarna M. Punalekar in Forest ecology and management, vol 501 (December-1 2021)
[article]
Titre : National scale mapping of larch plantations for Wales using the Sentinel-2 data archive Type de document : Article/Communication Auteurs : Suvarna M. Punalekar, Auteur ; Carole Planque, Auteur ; Richard M. Lucas, Auteur ; et al., Auteur Année de publication : 2021 Article en page(s) : n° 119679 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Applications de télédétection
[Termes IGN] apprentissage automatique
[Termes IGN] arbre de décision
[Termes IGN] carte forestière
[Termes IGN] coupe rase (sylviculture)
[Termes IGN] gestion forestière
[Termes IGN] image infrarouge
[Termes IGN] image Sentinel-MSI
[Termes IGN] indice de végétation
[Termes IGN] Larix decidua
[Termes IGN] maladie phytosanitaire
[Termes IGN] modélisation de la forêt
[Termes IGN] Pays de Galles
[Termes IGN] surveillance forestièreRésumé : (auteur) Accurate spatial information regarding forest types and tree species is immensely important for efficient forest management strategies. In the UK and particularly in Wales, creating a spatial inventory of larch (Larix sps.) plantations that encompasses both the public and private forests has become one of the highest priorities of woodland management policies, particularly given the need to respond to the rapid spread of Phytophthora ramorum fungal disease. For directing disease control measures, national scale, regularly updated mapping of larch distributions is essential. In this study, we applied a ExtraTree classifier machine learning algorithm to multi-year (June 2015 and December 2019) multi-path composites of vegetation indices derived from 10 m Sentinel-2 satellite data (spectral range used in this study: 490–2190 nm) to map the extent of larch plantations across Wales. For areas identified as woody vegetation, areas under larch plantations were associated with a needle-leaved leaf type and deciduous phenology, allowing differentiation from broad-leaved deciduous and needle-leaved evergreen types. The model accuracies for validation, which included overall accuracy, producer’s and user’s accuracies, exceeded 95% and the F1-score was greater than 0.97 for all forest types. Comparison against an independent reference dataset indicated all map accuracies above 90% (F1-score higher than 0.92) with the lowest value being 90.3% for the producer’s accuracy for larch. Short wave infrared and red-edge based indices were particularly useful for discriminating larch from other forest types. Capacity for updating information on clear-felling of larch stands through annual updates of a woody mask was also introduced. The resulting maps of larch plantations for Wales are the most current for Wales covering public as well as private woodlands and can be routinely updated. The classification approach has potential to be transferred to a wider geographical area given the availability of open-source multi-year Sentienl-2 datasets and robust calibration datasets. Numéro de notice : A2021-741 Affiliation des auteurs : non IGN Thématique : FORET/IMAGERIE Nature : Article DOI : 10.1016/j.foreco.2021.119679 Date de publication en ligne : 20/09/2021 En ligne : https://doi.org/10.1016/j.foreco.2021.119679 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=98657
in Forest ecology and management > vol 501 (December-1 2021) . - n° 119679[article]Early detection of pine wilt disease using deep learning algorithms and UAV-based multispectral imagery / Run Yu in Forest ecology and management, vol 497 (October-1 2021)
[article]
Titre : Early detection of pine wilt disease using deep learning algorithms and UAV-based multispectral imagery Type de document : Article/Communication Auteurs : Run Yu, Auteur ; Youqing Luo, Auteur ; Quan Zhou, Auteur ; et al., Auteur Année de publication : 2021 Article en page(s) : n° 119493 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Applications de télédétection
[Termes IGN] apprentissage profond
[Termes IGN] Chine
[Termes IGN] classification par réseau neuronal convolutif
[Termes IGN] dépérissement
[Termes IGN] image captée par drone
[Termes IGN] image multibande
[Termes IGN] maladie phytosanitaire
[Termes IGN] milieu tropical
[Termes IGN] peuplement mélangé
[Termes IGN] Pinus (genre)
[Termes IGN] Pinus massoniana
[Termes IGN] réflectance spectrale
[Termes IGN] Ulmus (genre)Résumé : (auteur) Pine wilt disease (PWD) is a global devastating threat to forest ecosystems. Therefore, a feasible and effective approach to precisely monitor PWD infection is indispensable, especially at the early stages. However, a precise definition of “early stage” and a rapid and high-efficiency method to detect PWD infection have not been well established. In this study, we systematically divided the PWD infection into green, early, middle, and late stages based on the needle color, the resin secretion, and whether the pine wood nematode (PWN) was carried. Simultaneously, an unmanned aerial vehicle (UAV) equipped with multispectral cameras was used to obtain images. Two target detection algorithms (Faster R-CNN and YOLOv4) and two traditional machine learning algorithms based on feature extraction (random forest and support vector machine) were employed to realize the recognition of infected pine trees. Moreover, we took into consideration of the influence of green broad-leaved trees on the identification of pine trees at the early stage of PWD infection. We obtained the following results: (1) the accuracy of Faster R-CNN (60.98–66.7%) was higher than that of YOLOv4 (57.07–63.55%), but YOLOv4 outperformed in terms of model size, processing speed, training time, and testing time; (2) although the traditional machine learning models had higher accuracy (73.28–79.64%), they were not able to directly identify the object from the images; (3) the accuracy of early detection of PWD infection showed an increase of 3.72–4.29%, from 42.36–44.59% to 46.08–48.88%, when broad-leaved trees were considered. In this study, the combination of UAV-based multispectral images and target detection algorithms allowed us to monitor the occurrence of PWD and obtain the distribution of infected trees at an early stage, which can provide technical support for the prevention and control of PWD. Numéro de notice : A2021-658 Affiliation des auteurs : non IGN Thématique : FORET/IMAGERIE Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1016/j.foreco.2021.119493 En ligne : https://doi.org/10.1016/j.foreco.2021.119493 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=98395
in Forest ecology and management > vol 497 (October-1 2021) . - n° 119493[article]Detecting structural changes induced by Heterobasidion root rot on Scots pines using terrestrial laser scanning / Timo P Pitkänen in Forest ecology and management, vol 492 (July-15 2021)
[article]
Titre : Detecting structural changes induced by Heterobasidion root rot on Scots pines using terrestrial laser scanning Type de document : Article/Communication Auteurs : Timo P Pitkänen, Auteur ; Tuula Piri, Auteur ; Aleski Lehtonen, Auteur ; Mikko Peltoniemi, Auteur Année de publication : 2021 Article en page(s) : n° 119239 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Lasergrammétrie
[Termes IGN] arbre mort
[Termes IGN] détection de changement
[Termes IGN] diamètre à hauteur de poitrine
[Termes IGN] données lidar
[Termes IGN] Finlande
[Termes IGN] Fungi
[Termes IGN] houppier
[Termes IGN] maladie phytosanitaire
[Termes IGN] Pinus sylvestris
[Termes IGN] semis de pointsRésumé : (auteur) Root rot, caused by the decay fungus Heterobasidion annosum, damages both below- and above-ground parts of Scots pines (Pinus Sylvestris L.). The diseased pines are often first characterized by deteriorated crowns and they will eventually be killed by the infection, but the process is gradual and difficult to be observed before the symptoms are severe. We tested the applicability of point cloud data produced by terrestrial laser scanning (TLS) for quantifying the structural differences between the healthy and the diseased trees. This approach was applied in a mature pine stand in southern Finland, which was known to be infected by H. annosum. We first scanned the stand using TLS, and thereafter felled the trees for detailed inspection and classification of the infection status. From the TLS point cloud, we estimated i) crosscut areas within the lowest 1 m of the stem, identifying potential deformations initiated by the fungus, ii) degree of crown deterioration, often providing the first visual signs of the infection at the level of individual trees, and iii) crown occupancy and open space around the trees, prone to be altered by the mycelial spread of the fungus between the adjacent trees. The results indicate that differences in both stem dimensions and crown deterioration can be detected between the healthy and the diseased trees. The diseased trees were found to have a more swollen butt, but no irregularities in circularity of the crosscuts were detected. In terms of vertical point distribution, the diseased trees had point accumulations at substantially greater heights, reflecting easier penetration of laser beams and sparsity of the crown. Regarding to crown occupancy, the diseased trees had more open space around their crowns, but difference to the healthy trees was not statistically significant. According to a simple prediction test based on the calculated features, up to 85% classification accuracy of the infection status was reached. This study is the first indication that TLS can successfully be applied for detecting structural changes of Scots pines connected to Heterobasidion root rot. Our results also show evidence that H. annosum causes butt swelling, which has rarely been reported as a symptom for Scots pines. Numéro de notice : A2021-457 Affiliation des auteurs : non IGN Thématique : FORET/IMAGERIE Nature : Article DOI : 10.1016/j.foreco.2021.119239 Date de publication en ligne : 29/04/2021 En ligne : https://doi.org/10.1016/j.foreco.2021.119239 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=97914
in Forest ecology and management > vol 492 (July-15 2021) . - n° 119239[article]Self-thinning tree mortality models that account for vertical stand structure, species mixing and climate / David I. Forrester in Forest ecology and management, Vol 487 ([01/05/2021])PermalinkModeling size-density trajectories of even-aged ash (Fraxinus excelsior L.) stands in France. A baseline to assess the impact of Chalara ash dieback / Noël Le Goff in Annals of Forest Science, vol 78 n° 1 (March 2021)PermalinkContrasting responses of habitat conditions and insect biodiversity to pest- or climate-induced dieback in coniferous mountain forests / Jérémy Cours in Forest ecology and management, vol 482 ([15/02/2021])PermalinkPermalinkEnsemble learning methods on the space of covariance matrices : application to remote sensing scene and multivariate time series classification / Sara Akodad (2021)PermalinkIs Xylella fastidiosa a serious threat to European forests? / Marie-Laure Desprez-Loustau in Forestry, an international journal of forest research, vol 94 n° 1 (January 2021)PermalinkQualification des données LiDAR GEDI pour le suivi de l’impact climatique sur la forêt de Südharz / Iris Jeuffrard (2021)PermalinkSuivi des vignes par télédétection de proximité : le deep learning au service de l’agriculture de précision / Sami Beniaouf (2021)PermalinkThe Impact of ash dieback on veteran trees in Southwestern Sweden / Vikki Bengtsson in Baltic forestry, vol 27 n° 1 ([01/01/2021])Permalink3D reconstruction of internal wood decay using photogrammetry and sonic tomography / Junjie Zhang in Photogrammetric record, vol 35 n° 171 (September 2020)PermalinkApplying multi-temporal Landsat satellite data and Markov-cellular automata to predict forest cover change and forest degradation of sundarban reserve forest, Bangladesh / Mohammad Emran Hasan in Forests, vol 11 n° 9 (September 2020)PermalinkA century of National Forest Inventory in Norway – informing past, present, and future decisions / Johannes Breidenbach in Forest ecosystems, vol 7 (2020)PermalinkDetection of Xylella fastidiosa infection symptoms with airborne multispectral and thermal imagery: Assessing bandset reduction performance from hyperspectral analysis / T. Poblete in ISPRS Journal of photogrammetry and remote sensing, vol 162 (April 2020)PermalinkPermalinkPermalinkGuide de gestion des crises sanitaires en forêt / Louise Brunier (2020)PermalinkIndividual tree detection and classification for mapping pine wilt disease using multispectral and visible color imagery acquired from unmanned aerial vehicle / Takeshi Hoshikawa in Journal of The Remote Sensing Society of Japan, vol 40 n° 1 (2020)PermalinkSpatio-Temporal Prediction of the Epidemic Spread of Dangerous Pathogens Using Machine Learning Methods / Wolfgang B. Hamer in ISPRS International journal of geo-information, Vol 9 n° 1 (January 2020)PermalinkMapping dead forest cover using a deep convolutional neural network and digital aerial photography / Jean-Daniel Sylvain in ISPRS Journal of photogrammetry and remote sensing, vol 156 (October 2019)PermalinkInterpreting effects of multiple, large-scale disturbances using national forest inventory data: A case study of standing dead trees in east Texas, USA / Christopher B. Edgar in Forest ecology and management, vol 437 (1 April 2019)Permalink