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Investigating the role of wind disturbance in tropical forests through a forest dynamics model and satellite observations / E-Ping Rau (2022)
Titre : Investigating the role of wind disturbance in tropical forests through a forest dynamics model and satellite observations Type de document : Thèse/HDR Auteurs : E-Ping Rau, Auteur ; Jérôme Chave, Directeur de thèse Editeur : Toulouse : Université de Toulouse 3 Paul Sabatier Année de publication : 2022 Importance : 184 p. Format : 21 x 30 cm Note générale : Bibliographie
Thèse en vue de l'obtention du Doctorat de l'Université de Toulouse 3 Paul SabatierLangues : Anglais (eng) Descripteur : [Vedettes matières IGN] Applications de télédétection
[Termes IGN] biomasse forestière
[Termes IGN] canopée
[Termes IGN] chablis (sylviculture)
[Termes IGN] cyclone
[Termes IGN] forêt tropicale
[Termes IGN] Guyane française
[Termes IGN] image Sentinel-SAR
[Termes IGN] modèle dynamique
[Termes IGN] perturbation écologique
[Termes IGN] précipitation
[Termes IGN] risque naturel
[Termes IGN] sécheresse
[Termes IGN] traitement d'image radar
[Termes IGN] ventIndex. décimale : THESE Thèses et HDR Résumé : (Auteur) Natural disturbances have an important influence on the structure, composition and functioning of tropical forests and a role in the regulation of biogeochemical cycles. The frequency and intensity of natural disturbances are modified by climate change: a better knowledge of their mechanism of action is necessary to predict the consequences of this modification. Modeling allows us to evaluate the role of each of the ecological processes and their link with environmental factors. Remote sensing tools inform us about the structure and functioning of forests at large scales, and can be useful for the calibration and validation of vegetation models. In this thesis, I employed both approaches to examine how tropical forests are shaped by natural disturbances, particularly wind, which is a major disturbance factor in many tropical regions. First, I evaluated the transferability of a spatially explicit, individual-based model via sensitivity testing and calibration of global parameters. The model correctly predicts forest structure at two contrasting sites, and its response is consistent with variations in climate forcing. Calibration of a small number of key parameters was required, including the parameter controlling mortality and crown allometry. To investigate the sensitivity of the model to mortality, I implemented a wind damage module based on biophysical principles and coupled with wind speed to model forest responses to extreme wind events. With increasing disturbance level, canopy height decreased steadily but biomass showed a non-linear response. Wind intensity had a strong impact on canopy height and biomass, but not the frequency of extreme wind events. Finally, I tested whether radar data from Sentinel-1 satellites could be used to detect gaps due to natural disturbances in French Guiana. The Sentinel-1 data detected more natural gaps above 0.2 ha than the optical satellite data, and they showed a spatial pattern consistent with the optical images. The level of disturbance did not vary with altitude. We found more disturbance during dry seasons, which could be due to the delayed response of precipitation rather than the direct response of drought. In conclusion, this thesis demonstrates that the integration between modeling and remote sensing sheds light on the effects of natural disturbances on tropical forests. The resulting results can be used to study other types of disturbances and their interactions on a large scale. Note de contenu : General introduction
General methods
1: Transferability of an individual- and trait-based forest dynamics model: a test case across the tropics
1.1 Abstract
1.2 Introduction
1.3 Materials and methods
1.4 Results
1.5 Discussion
1.6 Acknowledgements and author contributions
1.7 Supplementary data
2: Wind speed controls forest structure in subtropical forests exposed to cyclones: a case study using an individual-based model
2.1 Abstract
2.2 Introduction
2.3 Material and methods
2.4 Results
2.5 Discussion
2.6 Acknowledgments and author contributions
2.7 Supplementary data
3: Detecting Natural Disturbances in Tropical Forests Using Sentinel-1 SAR Data: a Test in French Guiana
3.1 Abstract
3.2 Introduction
3.3 Methods
3.4 Results
3.5 Discussions
3.6 Acknowledgments and author contributions
3.7 Supplementary data
General discussion and conclusionsNuméro de notice : 26836 Affiliation des auteurs : non IGN Thématique : FORET/IMAGERIE Nature : Thèse française Note de thèse : Thèse de Doctorat : Ecologie, biodiversité et évolution : Toulouse 3 : 2022 nature-HAL : Thèse DOI : sans Date de publication en ligne : 20/06/2022 En ligne : https://tel.hal.science/tel-03699667 Format de la ressource électronique : URL Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=101075 Monitoring forest-savanna dynamics in the Guineo-Congolian transition area of the centre region of Cameroon / Le Bienfaiteur Sagang Takougoum (2022)
Titre : Monitoring forest-savanna dynamics in the Guineo-Congolian transition area of the centre region of Cameroon Type de document : Thèse/HDR Auteurs : Le Bienfaiteur Sagang Takougoum, Auteur ; Bonaventure Sonké, Directeur de thèse ; Nicolas Barbier, Directeur de thèse Editeur : Yaoundé : Université de Yaoundé Année de publication : 2022 Importance : 166 p. Format : 21 x 30 cm Note générale : Bibliographie
Thèse pour obtenir le grade de Docteur de l'Université de Yaoundé 1, Spécialité Botanique-EcologieLangues : Anglais (eng) Descripteur : [Vedettes matières IGN] Applications de télédétection
[Termes IGN] biomasse aérienne
[Termes IGN] Cameroun
[Termes IGN] carte d'utilisation du sol
[Termes IGN] carte de la végétation
[Termes IGN] classification dirigée
[Termes IGN] classification par maximum de vraisemblance
[Termes IGN] données de terrain
[Termes IGN] données lidar
[Termes IGN] données localisées 3D
[Termes IGN] dynamique de la végétation
[Termes IGN] écotone
[Termes IGN] flore locale
[Termes IGN] forêt
[Termes IGN] Google Earth Engine
[Termes IGN] image Landsat
[Termes IGN] image SPOT 6
[Termes IGN] image SPOT 7
[Termes IGN] incendie de forêt
[Termes IGN] modèle statistique
[Termes IGN] savane
[Termes IGN] surveillance forestièreIndex. décimale : THESE Thèses et HDR Résumé : (Auteur) Understanding the effects of global change (combining anthropic and climatic pressures) on biome distribution needs innovative approaches allowing to address the large spatial scales involved and the scarcity of available ground data. Characterizing vegetation dynamics at landscape to regional scale requires both a high level of spatial detail (resolution), generally obtained through precise field measurements, and a sufficient coverage of the land surface (extent) provided by satellite images. The difficulty usually lies between these two scales as both signal saturation from satellite data and ground sampling limitations contribute to inaccurate extrapolations. Airborne laser scanning (ALS) data has revolutionized the trade-off between spatial detail and landscape coverage as it gives accurate information of the vegetation’s structure over large areas which can be used to calibrate satellite data. Also recent satellite data of improved spectral and spatial resolutions (Sentinel 2) allow for detailed characterizations of compositional gradients in the vegetation, notably in terms of the abundance of broad functional/optical plant types. Another major obstacle comes from the lack of a temporal perspective on dynamics and disturbances. Growing satellite imagery archives over several decades (45 years; Landsat) and available computing facilities such as Google Earth Engine (GEE) provide new possibilities to track long term successional trajectories and detect significant disturbances (i.e. fire) at a fine spatial detail (30m) and relate them to the current structure and composition of the vegetation. With these game changing tools our objective was to track long-term dynamics of forest-savanna ecotone in the Guineo-Congolian transition area of the Central Region of Cameroon with induced changes in the vegetatio structure and composition within two contrasted scenarios of anthropogenic pressures: 1) the Nachtigal area which is targeted for the dam construction and subject to intense agricultural activities and 2) the Mpem et Djim National Park (MDNP) which has no management plan. The maximum likelihood classification of the Spot 6/7 image aided with the information from the canopy height derived from ALS data discriminated the vegetation types within the Nachtigal area with good accuracy (96.5%). Using field plots data in upscaling aboveground biomass (AGB) form field plots estimates to the satellite estimates with model-based approaches lead to a systematic overestimation in AGB density estimates and a root mean squared prediction error (RMSPE) of up to 65 Mg.ha−1 (90%), whereas calibration with ALS data (AGBALS) lead to low bias and a drop of ~30% in RMSPE (down to 43 Mg.ha−1, 58%) with little effect of the satellite sensor used. However, these results also confirm that, whatever the spectral indices used and attention paid to sensor quality and pre-processing, the signal is not sufficient to warrant accurate pixel wise predictions, because of large relative RMSPE, especially above (200–250 Mg.ha−1). The design-based approach, for which average AGB density values were attributed to mapped land cover classes, proved to be a simple and reliable alternative (for landscape to region level estimations), when trained with dense ALS samples. AGB and species diversity measured within 74 field inventory plots (distributed along a savanna to forest successional gradient) were higher for the vegetation located in the MDNP compared to their pairs in the Nachtigal area. The automated unsupervised long-term (45 years) land cover change monitoring from Landsat image archives based on GEE captured a consistent and regular pattern of forest progression into savanna at an average rate of 1% (ca. 6 km².year-1). No fire occurrence was captured for savanna that transited to forest within five years of monitoring. Distinct assemblages of spectral species are apparent in forest vegetation which is consistent with the age of transition. As forest gets older AGBALS recovers at a rate of 4.3 Mg.ha-1.year-1 in young forest stands ( Note de contenu : Chapter 1. Generalities
1.1 Introduction
1.2 Literature Review
Chapter 2. Material And Methods
2.1 Material
2.2 Methods
Chapter 3. Results And Discussion
3.1 Results
3.2 Discussion
Chapter 4. Conclusion And Perspectives
4.1 Conclusion
4.2 PerspectivesNuméro de notice : 26820 Affiliation des auteurs : non IGN Thématique : BIODIVERSITE/FORET/IMAGERIE Nature : Thèse étrangère Note de thèse : Thèse de doctorat : Botanique-Ecologie : Yaoundé : 2022 Organisme de stage : Institut de Recherche pour le Développement IRD nature-HAL : Thèse DOI : sans Date de publication en ligne : 13/04/2022 En ligne : https://hal.inrae.fr/tel-03528875/document Format de la ressource électronique : URL Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=100465 Monitoring leaf phenology in moist tropical forests by applying a superpixel-based deep learning method to time-series images of tree canopies / Guangqin Song in ISPRS Journal of photogrammetry and remote sensing, vol 183 (January 2022)
[article]
Titre : Monitoring leaf phenology in moist tropical forests by applying a superpixel-based deep learning method to time-series images of tree canopies Type de document : Article/Communication Auteurs : Guangqin Song, Auteur ; Shengbiao Wu, Auteur ; Calvin K.F. Lee, Auteur ; et al., Auteur Année de publication : 2022 Article en page(s) : pp 19 - 33 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Traitement d'image optique
[Termes IGN] algorithme SLIC
[Termes IGN] apprentissage profond
[Termes IGN] canopée
[Termes IGN] classification dirigée
[Termes IGN] diagnostic foliaire
[Termes IGN] Enhanced vegetation index
[Termes IGN] feuille (végétation)
[Termes IGN] forêt tropicale
[Termes IGN] Panama
[Termes IGN] phénologie
[Termes IGN] photosynthèse
[Termes IGN] segmentation sémantique
[Termes IGN] série temporelle
[Termes IGN] superpixel
[Termes IGN] variation saisonnièreRésumé : (auteur) Tropical leaf phenology—particularly its variability at the tree-crown scale—dominates the seasonality of carbon and water fluxes. However, given enormous species diversity, accurate means of monitoring leaf phenology in tropical forests is still lacking. Time series of the Green Chromatic Coordinate (GCC) metric derived from tower-based red–greenblue (RGB) phenocams have been widely used to monitor leaf phenology in temperate forests, but its application in the tropics remains problematic. To improve monitoring of tropical phenology, we explored the use of a deep learning model (i.e. superpixel-based Residual Networks 50, SP-ResNet50) to automatically differentiate leaves from non-leaves in phenocam images and to derive leaf fraction at the tree-crown scale. To evaluate our model, we used a year of data from six phenocams in two contrasting forests in Panama. We first built a comprehensive library of leaf and non-leaf pixels across various acquisition times, exposure conditions and specific phenocams. We then divided this library into training and testing components. We evaluated the model at three levels: 1) superpixel level with a testing set, 2) crown level by comparing the model-derived leaf fractions with those derived using image-specific supervised classification, and 3) temporally using all daily images to assess the diurnal stability of the model-derived leaf fraction. Finally, we compared the model-derived leaf fraction phenology with leaf phenology derived from GCC. Our results show that: 1) the SP-ResNet50 model accurately differentiates leaves from non-leaves (overall accuracy of 93%) and is robust across all three levels of evaluations; 2) the model accurately quantifies leaf fraction phenology across tree-crowns and forest ecosystems; and 3) the combined use of leaf fraction and GCC helps infer the timing of leaf emergence, maturation and senescence, critical information for modeling photosynthetic seasonality of tropical forests. Collectively, this study offers an improved means for automated tropical phenology monitoring using phenocams. Numéro de notice : A2022-009 Affiliation des auteurs : non IGN Thématique : FORET/IMAGERIE Nature : Article nature-HAL : ArtAvecCL-RevueIntern DOI : 10.1016/j.isprsjprs.2021.10.023 Date de publication en ligne : 10/11/2021 En ligne : https://doi.org/10.1016/j.isprsjprs.2021.10.023 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=99057
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Titre : Monocular depth estimation in forest environments Type de document : Article/Communication Auteurs : Hristina Hristova, Auteur ; Meinrad Abegg, Auteur ; Christoph Fischer, Auteur ; Nataliia Rehush, Auteur Editeur : International Society for Photogrammetry and Remote Sensing ISPRS Année de publication : 2022 Collection : International Archives of Photogrammetry, Remote Sensing and Spatial Information Sciences, ISSN 1682-1750 num. 43-B2 Conférence : ISPRS 2022, Commission 2, 24th ISPRS international congress, Imaging today, foreseeing tomorrow 06/06/2022 11/06/2022 Nice France OA ISPRS Archives Importance : pp 1017 - 1023 Note générale : bibliographie Langues : Anglais (eng) Descripteur : [Vedettes matières IGN] Lasergrammétrie
[Termes IGN] apprentissage dirigé
[Termes IGN] données lidar
[Termes IGN] données localisées 3D
[Termes IGN] forêt
[Termes IGN] image isolée
[Termes IGN] inventaire forestier (techniques et méthodes)
[Termes IGN] jeu de données localisées
[Termes IGN] profondeur
[Termes IGN] vision monoculaireRésumé : (auteur) Depth estimation from a single image is a challenging task, especially inside the highly structured forest environment. In this paper, we propose a supervised deep learning model for monocular depth estimation based on forest imagery. We train our model on a new data set of forest RGB-D images that we collected using a terrestrial laser scanner. Alongside the input RGB image, our model uses a sparse depth channel as input to recover the dense depth information. The prediction accuracy of our model is significantly higher than that of state-of-the-art methods when applied in the context of forest depth estimation. Our model brings the RMSE down to 2.1 m, compared to 4 m and above for reference methods. Numéro de notice : C2022-022 Affiliation des auteurs : non IGN Thématique : FORET/IMAGERIE/INFORMATIQUE Nature : Communication nature-HAL : ComAvecCL&ActesPubliésIntl DOI : 10.5194/isprs-archives-XLIII-B2-2022-1017-2022 Date de publication en ligne : 30/05/2022 En ligne : http://dx.doi.org/10.5194/isprs-archives-XLIII-B2-2022-1017-2022 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=100848
Titre : Multi-layer modeling of dense vegetation from aerial LiDAR scans Type de document : Article/Communication Auteurs : Ekaterina Kalinicheva , Auteur ; Loïc Landrieu , Auteur ; Clément Mallet , Auteur ; Nesrine Chehata , Auteur Editeur : Computer vision foundation CVF Année de publication : 2022 Projets : 1-Pas de projet / Conférence : EarthVision 2022, Large Scale Computer Vision for Remote Sensing Imagery, workshop joint to CVPR 2022 19/06/2022 24/06/2022 New Orleans Louisiane - Etats-Unis OA Proceedings Importance : pp 1341 - 1350 Format : 21 x 30 cm Note générale : bibliographie Langues : Français (fre) Descripteur : [Vedettes matières IGN] Lasergrammétrie
[Termes IGN] apprentissage profond
[Termes IGN] canopée
[Termes IGN] carte d'occupation du sol
[Termes IGN] données lidar
[Termes IGN] données localisées 3D
[Termes IGN] étage de végétation
[Termes IGN] foresterie
[Termes IGN] maillage
[Termes IGN] parcelle forestière
[Termes IGN] reconstruction d'objet
[Termes IGN] segmentation d'image
[Termes IGN] semis de pointsRésumé : (auteur) The analysis of the multi-layer structure of wild forests is an important challenge of automated large-scale forestry. While modern aerial LiDARs offer geometric information across all vegetation layers, most datasets and methods focus only on the segmentation and reconstruction of the top of canopy. We release WildForest3D, which consists of 29 study plots and over 2000 individual trees across 47 000m2 with dense 3D annotation, along with occupancy and height maps for 3 vegetation layers: ground vegetation, understory, and overstory. We propose a 3D deep net- work architecture predicting for the first time both 3D point- wise labels and high-resolution layer occupancy rasters simultaneously. This allows us to produce a precise estimation of the thickness of each vegetation layer as well as the corresponding watertight meshes, therefore meeting most forestry purposes. Both the dataset and the model are released in open access: https://github.com/ ekalinicheva/multi_layer_vegetation. Numéro de notice : C2022-007 Affiliation des auteurs : UGE-LASTIG+Ext (2020- ) Autre URL associée : vers CVF Thématique : FORET/IMAGERIE Nature : Communication nature-HAL : ComAvecCL&ActesPubliésIntl DOI : 10.1109/CVPRW56347.2022.00140 Date de publication en ligne : 25/04/2022 En ligne : https://arxiv.org/abs/2204.11620 Format de la ressource électronique : URL article Permalink : https://documentation.ensg.eu/index.php?lvl=notice_display&id=100509 New insights in the modeling and simulation of tree and stand level variables in Mediterranean mixed forests in the present context of climate change / Diego Rodríguez de Prado (2022)PermalinkPermalinkRegeneration of spruce - fir - beech mixed forests under climate and ungulate pressure / Mithila Unkule (2022)PermalinkPermalinkLa situation des forêts du monde 2022 : Des solutions forestières pour une relance verte et des économies inclusives, résilientes et durables / Organisation des Nations Unies pour l'alimentation et l'agriculture (Rome, Italie) (2022)PermalinkPermalinkThe long-term development of temperate woodland creation sites: from tree saplings to mature woodlands / Elisa Fuentes-Montemayor in Forestry, an international journal of forest research, vol 95 n° 1 (January 2022)PermalinkUnderstory plant community responses to widespread spruce mortality in a subalpine forest / Trevor A. Carter in Journal of vegetation science, vol 33 n° 1 (January 2022)PermalinkVegetation changes in the understory of nitrogen-sensitive temperate forests over the past 70 years / Marina Roth in Forest ecology and management, vol 503 (January-1 2022)PermalinkPermalink